Brad Balderson

icon indicating a website link bradbalderson.info icon indicating an email [email protected]

icon company @mcvickerlab icon location Salk Institute icon location Bioinformatics Postdoc at Salk Institute, San Diego, CA.

Results 3 comments of Brad Balderson

Document performance considerations?

For others, I found a better solution for the above-described task was to use the [bigWigAverageOverBed](https://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/) tool from UCSC.

Document performance considerations?

`$ ./bigWigAverageOverBed` ``` bigWigAverageOverBed v2 - Compute average score of big wig over each bed, which may have introns. usage: bigWigAverageOverBed in.bw in.bed out.tab The output columns are: name -...

ambiguous results when matching souporcell clusters to genotyped donors

@ccrobertson maybe some of the samples actually do not match the genotypes? i.e. could the sample have been accidentally performed on the wrong individual maybe? I am seeing this issue...