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Wrong image dimensions written for recent `tifffile`
It seems like recent tifffile versions lead to to_tiff
not writing images with the correct dimension.
A reproducible example is added by extending the unittest to check for the correct image dimensions:
https://github.com/votti/xtiff/blob/799fe2fa5f6337030c63fdb5064f59bea6e7ddc0/tests/test_tiff.py#L25-L26
This failfs for tifffile-2024.9.20
but works for tifffile-2023.4.12
.
Likely this causes the issue reported here: https://github.com/BodenmillerGroup/ImcSegmentationPipeline/issues/144#issuecomment-2415974845
A workaround would be to explicitly pin the tifffile
version