Bo
#141 I updated my vtools to v3.1.2, python 3.7.6, King 2.2.4 As I see in this disussion, @gaow commented that KING is updated. But I'm getting the error exactly as...
Perhaps I have some particular version of SWIG? ``` > vtools import test.vcf INFO: Using primary reference genome hg19 of the project. INFO: Importing variants from test.vcf (1/1) ERROR: cannot...
MD Anderson repo should be shutdown soon.
We are working in a docker station and are using version 3.0.2 of Vtools and version 3.7.2 of Python. The SKAT test is no longer doable and we get this...
From email correspondence: If a DATABASE.ann file exists in the local repository, but there is no DATABASE.DB or .DB.gz, vtools 3 complains that there is no DATABASE.DB in the online...
due to the side bar, which is not fluid.
It is useful for people with write permission to edit our documentation, although a hook is needed to generate HTML pages from MD ones.
Interesting talk at SciPy 2019, [vaex](https://towardsdatascience.com/vaex-out-of-core-dataframes-for-python-and-fast-visualization-12c102db044a) acts on HDF5 files (that we use) but does the filtering and computation extremely fast with minimal memory usage (use memory map heavily). The...
We are currently using the Vtools platform to run some SKAT tests in an ongoing project. We have run the SKAT test and would further like to get more information...
In November 2018 we I ran some test everything was ok (python2.7). However, when trying to run the tests these days (python3.5) with the same commands we have run into...