TMD

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requires https://github.com/BlueBrain/MorphIO/pull/431 This is a draft to use MorphIO as default loader. But for now MorphIO silently fixes the loaded morphologies according to arbitrary (though relevant) rules (as described in...

adrien-berchet

I tried extracting input distributions from the files I have and received a SomaError: A soma is already defined. I was wondering how this error could be resolved. I have...

riddick-the-furyan

Use MorphIO as IO layer

2

wizmer

KeyError for a neuron while computing persistence diagram

3

When calling `get_persistence_diagram` on my neuron ( swc file attached) that looks like this:  I get the following error: ```py In [18]: perd =...

dokato

Persistence diagram failed/empty list for some neurons

3

Hi: I'm using this TMD method for SWC file classification for basal dendrites, it yields pretty good results. But for some SWCs, when using get_ph_neuron(), some neurons failed with an...

yanyanming77

Node labeling affects persistence diagram outcome

1

Hey there, I've been working on morphology package in Python3 which features your computation of persistence diagrams. While I was trying to match your results with mine I realized that...

Visdoom

Ignore secondary annotations (undefined annotations in TYPE_DCT)

2

Usage of reconstruction data files with structural annotations for anatomical contours fail to load in the current TMD package. This is because those annotations usually are not connected with the...

BCJongbloets

Tutorial not running

1

Dear developers, I found your paper and with read it with great interest. Furthermore, I have discovered this repository and would like to integrate it into my academic research at...

Sepulcrum89