NeuroMorphoVis
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BlueBrain
A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing digital reconstructions of neuronal morphology skeletons extracted from microscopy stacks.
Sometimes, a given morphology is not annotated correctly and it is therefore necessary to rename some of the branches' section type. If we can have this feature in neuromorphoviz, that...
For a given morphology , especially with new full brain reconstructions, we need to be able to subsample or edit morphologies. One example is Mouselight morphologies where axons are so...
I did git clone, then; ./setup.py --prefix=../neuro/ --verbose --blender-version 3.1 Installing collected packages: pytz, tzdata, six, numpy, python-dateutil, pandas ERROR: pip's dependency resolver does not currently take into account all...
Currently, we have support to render front, side, and top views of the morphology. We need to add explicit support to render the following views: * XY * YZ *...
The resolution parameters set in the UI are not passed to the renderer.
In the options, set the number of colors to allow the users to contorl the visual detail.
To keep the focus on most of the thick branches, use the dendrites to define the bounding box that will be used to setup the camera instead of truncating part...
Thank you for this amazing tool! I tried to install both in Mac and CentOS Blender version 3.5 with the provided script, but it usually found issues with package versions...
To make the user aware with all the dependencies of the system, it is important now to add a new package to display the installed packages with their specific versions.
To make it easier to install NMV, we can clone the repo in the addon directory and then when we load it, we should check for the dependencies if needed...