EModelRunner
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BlueBrain
Runs cells from stand-alone packages.
Hi, Thank you for sharing the code! It is very interesting works. Based on what I've read from your papers, it seems like this GitHub repository is a simulation of...
https://pypi.org/project/EModelRunner/ The solution is to update the URL to point to the raw version of the image. E.g. ```rst .. image:: docs/images/voltage-readme.png .. image:: https://raw.githubusercontent.com/BlueBrain/BlueCelluLab/main/docs/images/voltage-readme.png ```
Hi! The keep alive workflow fails at the pushing commit step. It looks like it is due to the main branch being protected. Link to the workflow log: https://github.com/BlueBrain/EModelRunner/actions/runs/4648484455/jobs/8226205822
EModelRunner uses BluePyOpt to apply the protocols to the cell, not to optimise the cell model. There is some hacky freeze/unfreeze frozen/unfrozen parameter specification logic happening in EModelRunner however. Can...
* it works without setting the bounds * it does not work without the freeze hack (or at least I couldn't get it to work)
#### Problem NEURON 8.0 introduces a breaking change in the constant values [1, 2]. The NEURON our supercomputer (the one used in generating the packages) does not take this change...
The coverage is currently (%69) not so high. More users will try EModelRunner now since the Synplas paper is released. Increasing the coverage will allow us detect issues before them....
Maybe you should add to the following list of mechanisms all the thalamus-specific mechanisms that are not present yet _Originally posted by @AurelienJaquier in https://github.com/BlueBrain/EModelRunner/pull/31#discussion_r789471122_
The mismatch between the current and voltage shapes reported for the thalamus protocols (#43 ) might also be occurring in the SSCX protocols.