Blosc
fail to pip install bcolz in python 2.7 64 bit environment
I can install bcolz-0.12.1 and bcolz-1.0.0 in 64bit environment, But fail to install the bcolz-1.1.0.
This may be unrelated, but I noticed the other day that bcolz 1.1.0 is not in the anaconda default channel.
On Wednesday, October 12, 2016, billcheuk [email protected] wrote:
I can install bcolz-0.12.1 and bcolz-1.0.0 in 64bit environment, But fail to install the bcolz-1.1.0.
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Alistair Miles Head of Epidemiological Informatics Centre for Genomics and Global Health http://cggh.org The Wellcome Trust Centre for Human Genetics Roosevelt Drive Oxford OX3 7BN United Kingdom Email: [email protected] Web: http://purl.org/net/aliman Twitter: https://twitter.com/alimanfoo Tel: +44 (0)1865 287721
Again this may be unrelated, but on travis I was getting cc1: error: unrecognized command line option ‘-mavx2’ when trying to install bcolz 1.1.0 via pip into a conda environment. The problem was the system gcc was too old, doing conda install gcc before pip install bcolz fixed the problem.
which os? i don't really have issues on linux myself, and for bquery i test linux + os/x and they work fine. Is it windows? See also https://github.com/visualfabriq/bquery/blob/master/.travis.yml
Edit:
pip install pip --upgrade
pip install setuptools --upgrade
There are some major differences between pip 7 and 8 in terms of how it handles dependencies and binaries. Bquery had issues in pip8 while it worked in pip7, so I had to upgrade stuff and assume a minimum pip and setuptools in the bquery requirements
Yes, I am using Win7 64 bits with anaconda py2.7 64 bit. Following are all the error log.
D:>pip install bcolz --no-deps
Collecting bcolz Using cached bcolz-1.1.0.tar.gz Building wheels for collected packages: bcolz Running setup.py bdist_wheel for bcolz: started Running setup.py bdist_wheel for bcolz: finished with status 'error' Complete output from command D:\eclipse\Anaconda2\python.exe -u -c "import setuptools, tokenize;file='c:\users\914187\appdata\local\temp\pip-build-3iskin\bcolz\setup.py';exec(compile(getattr(tokenize, 'open', open)(file).read().replace('\r\n', '\n'), file, 'exec'))" bdist_wheel -d c:\users\914187\appdata\local\temp\tmpdzcl1qpip-wheel- --python-tag cp27: SSE2 detected running bdist_wheel running build running build_py creating build creating build\lib.win-amd64-2.7 creating build\lib.win-amd64-2.7\bcolz copying bcolz\arrayprint.py -> build\lib.win-amd64-2.7\bcolz copying bcolz\attrs.py -> build\lib.win-amd64-2.7\bcolz copying bcolz\chunked_eval.py -> build\lib.win-amd64-2.7\bcolz copying bcolz\ctable.py -> build\lib.win-amd64-2.7\bcolz copying bcolz\defaults.py -> build\lib.win-amd64-2.7\bcolz copying bcolz\py2help.py -> build\lib.win-amd64-2.7\bcolz copying bcolz\py2help_tests.py -> build\lib.win-amd64-2.7\bcolz copying bcolz\toplevel.py -> build\lib.win-amd64-2.7\bcolz copying bcolz\utils.py -> build\lib.win-amd64-2.7\bcolz copying bcolz\version.py -> build\lib.win-amd64-2.7\bcolz copying bcolz__init__.py -> build\lib.win-amd64-2.7\bcolz creating build\lib.win-amd64-2.7\bcolz\tests copying bcolz\tests\all.py -> build\lib.win-amd64-2.7\bcolz\tests copying bcolz\tests\common.py -> build\lib.win-amd64-2.7\bcolz\tests copying bcolz\tests\test_attrs.py -> build\lib.win-amd64-2.7\bcolz\tests copying bcolz\tests\test_carray.py -> build\lib.win-amd64-2.7\bcolz\tests copying bcolz\tests\test_carray_objects.py -> build\lib.win-amd64-2.7\bcolz\tests copying bcolz\tests\test_ctable.py -> build\lib.win-amd64-2.7\bcolz\tests copying bcolz\tests\test_ndcarray.py -> build\lib.win-amd64-2.7\bcolz\tests copying bcolz\tests\test_queries.py -> build\lib.win-amd64-2.7\bcolz\tests copying bcolz\tests__init__.py -> build\lib.win-amd64-2.7\bcolz\tests copying bcolz\carray_ext.pxd -> build\lib.win-amd64-2.7\bcolz running build_ext skipping 'bcolz\carray_ext.c' Cython extension (up-to-date) building 'bcolz.carray_ext' extension creating build\temp.win-amd64-2.7 creating build\temp.win-amd64-2.7\Release creating build\temp.win-amd64-2.7\Release\bcolz creating build\temp.win-amd64-2.7\Release\c-blosc creating build\temp.win-amd64-2.7\Release\c-blosc\blosc creating build\temp.win-amd64-2.7\Release\c-blosc\internal-complibs creating build\temp.win-amd64-2.7\Release\c-blosc\internal-complibs\lz4-1.7.2 creating build\temp.win-amd64-2.7\Release\c-blosc\internal-complibs\snappy-1.1.1 creating build\temp.win-amd64-2.7\Release\c-blosc\internal-complibs\zlib-1.2.8 C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Bin\amd64\cl.exe /c /nologo /Ox /MD /W3 /GS- /DNDEBUG -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -D__SSE2__=1 -Ibcolz -Ic-blosc\blosc -Ic-blosc/internal-complibs\lz4-1.7.2 -Ic-blosc/internal-complibs\snappy-1.1.1 -Ic-blosc/internal-complibs\zlib-1.2.8 -ID:\eclipse\Anaconda2\lib\site-packages\numpy\core\include -ID:\eclipse\Anaconda2\include -ID:\eclipse\Anaconda2\PC /Tcbcolz\carray_ext.c /Fobuild\temp.win-amd64-2.7\Release\bcolz\carray_ext.obj -DSHUFFLE_SSE2_ENABLED carray_ext.c d:\eclipse\anaconda2\lib\site-packages\numpy\core\include\numpy\npy_1_7_deprecated_api.h(12) : Warning Msg: Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION bcolz\carray_ext.c(3585) : warning C4244: '=' : conversion from 'npy_intp' to 'long', possible loss of data bcolz\carray_ext.c(3594) : warning C4244: 'function' : conversion from 'npy_intp' to 'long', possible loss of data bcolz\carray_ext.c(5368) : warning C4267: '=' : conversion from 'size_t' to 'int', possible loss of data bcolz\carray_ext.c(5378) : warning C4267: '=' : conversion from 'size_t' to 'int', possible loss of data bcolz\carray_ext.c(5388) : warning C4267: '=' : conversion from 'size_t' to 'int', possible loss of data bcolz\carray_ext.c(5541) : warning C4267: 'function' : conversion from 'size_t' to 'int', possible loss of data bcolz\carray_ext.c(5801) : warning C4267: 'function' : conversion from 'size_t' to 'int', possible loss of data bcolz\carray_ext.c(10340) : warning C4244: '=' : conversion from 'Py_ssize_t' to 'int', possible loss of data bcolz\carray_ext.c(12348) : warning C4244: 'function' : conversion from 'npy_intp' to 'long', possible loss of data bcolz\carray_ext.c(17997) : warning C4244: '=' : conversion from 'npy_intp' to 'int', possible loss of data bcolz\carray_ext.c(17998) : warning C4244: '=' : conversion from 'npy_intp' to 'int', possible loss of data bcolz\carray_ext.c(21300) : warning C4244: '=' : conversion from 'npy_intp' to 'int', possible loss of data bcolz\carray_ext.c(21322) : warning C4244: '=' : conversion from 'npy_intp' to 'int', possible loss of data bcolz\carray_ext.c(22111) : warning C4244: '=' : conversion from 'npy_intp' to 'int', possible loss of data bcolz\carray_ext.c(25205) : warning C4244: '=' : conversion from 'npy_intp' to 'int', possible loss of data bcolz\carray_ext.c(25378) : warning C4244: '=' : conversion from 'npy_intp' to 'int', possible loss of data bcolz\carray_ext.c(25392) : warning C4244: '=' : conversion from 'npy_intp' to 'int', possible loss of data bcolz\carray_ext.c(25402) : warning C4244: '=' : conversion from 'npy_intp' to 'int', possible loss of data bcolz\carray_ext.c(25478) : warning C4244: '=' : conversion from 'npy_intp' to 'int', possible loss of data bcolz\carray_ext.c(28221) : warning C4244: 'function' : conversion from 'npy_intp' to 'int', possible loss of data bcolz\carray_ext.c(28221) : warning C4244: 'function' : conversion from 'npy_intp' to 'int', possible loss of data bcolz\carray_ext.c(31255) : warning C4244: 'function' : conversion from 'npy_intp' to 'int', possible loss of data bcolz\carray_ext.c(31255) : warning C4244: 'function' : conversion from 'npy_intp' to 'int', possible loss of data bcolz\carray_ext.c(34265) : warning C4244: '=' : conversion from 'npy_intp' to 'int', possible loss of data bcolz\carray_ext.c(34631) : warning C4244: '=' : conversion from 'npy_intp' to 'int', possible loss of data C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Bin\amd64\cl.exe /c /nologo /Ox /MD /W3 /GS- /DNDEBUG -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -D__SSE2__=1 -Ibcolz -Ic-blosc\blosc -Ic-blosc/internal-complibs\lz4-1.7.2 -Ic-blosc/internal-complibs\snappy-1.1.1 -Ic-blosc/internal-complibs\zlib-1.2.8 -ID:\eclipse\Anaconda2\lib\site-packages\numpy\core\include -ID:\eclipse\Anaconda2\include -ID:\eclipse\Anaconda2\PC /Tcc-blosc/blosc\bitshuffle-generic.c /Fobuild\temp.win-amd64-2.7\Release\c-blosc/blosc\bitshuffle-generic.obj -DSHUFFLE_SSE2_ENABLED bitshuffle-generic.c c-blosc/blosc\bitshuffle-generic.c(72) : warning C4244: '=' : conversion from 'int64_t' to 'int8_t', possible loss of data c-blosc/blosc\bitshuffle-generic.c(175) : warning C4244: '=' : conversion from 'int64_t' to 'uint8_t', possible loss of data C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Bin\amd64\cl.exe /c /nologo /Ox /MD /W3 /GS- /DNDEBUG -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -D__SSE2__=1 -Ibcolz -Ic-blosc\blosc -Ic-blosc/internal-complibs\lz4-1.7.2 -Ic-blosc/internal-complibs\snappy-1.1.1 -Ic-blosc/internal-complibs\zlib-1.2.8 -ID:\eclipse\Anaconda2\lib\site-packages\numpy\core\include -ID:\eclipse\Anaconda2\include -ID:\eclipse\Anaconda2\PC /Tcc-blosc/blosc\blosc.c /Fobuild\temp.win-amd64-2.7\Release\c-blosc/blosc\blosc.obj -DSHUFFLE_SSE2_ENABLED blosc.c c-blosc/blosc\blosc.c(468) : warning C4267: 'initializing' : conversion from 'size_t' to 'uLongf', possible loss of data c-blosc/blosc\blosc.c(481) : warning C4267: 'initializing' : conversion from 'size_t' to 'uLongf', possible loss of data c-blosc/blosc\blosc.c(569) : warning C4267: '=' : conversion from 'size_t' to 'int32_t', possible loss of data c-blosc/blosc\blosc.c(811) : warning C4101: 'rc' : unreferenced local variable c-blosc/blosc\blosc.c(944) : warning C4267: '=' : conversion from 'size_t' to 'int32_t', possible loss of data c-blosc/blosc\blosc.c(945) : warning C4267: '=' : conversion from 'size_t' to 'int32_t', possible loss of data c-blosc/blosc\blosc.c(1123) : warning C4267: 'function' : conversion from 'size_t' to 'int32_t', possible loss of data c-blosc/blosc\blosc.c(1151) : warning C4996: 'getenv': This function or variable may be unsafe. Consider using _dupenv_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details. C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Include\stdlib.h(447) : see declaration of 'getenv' c-blosc/blosc\blosc.c(1161) : warning C4996: 'getenv': This function or variable may be unsafe. Consider using _dupenv_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details. C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Include\stdlib.h(447) : see declaration of 'getenv' c-blosc/blosc\blosc.c(1175) : warning C4996: 'getenv': This function or variable may be unsafe. Consider using _dupenv_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details. C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Include\stdlib.h(447) : see declaration of 'getenv' c-blosc/blosc\blosc.c(1185) : warning C4996: 'getenv': This function or variable may be unsafe. Consider using _dupenv_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details. C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Include\stdlib.h(447) : see declaration of 'getenv' c-blosc/blosc\blosc.c(1192) : warning C4996: 'getenv': This function or variable may be unsafe. Consider using _dupenv_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details. C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Include\stdlib.h(447) : see declaration of 'getenv' c-blosc/blosc\blosc.c(1202) : warning C4996: 'getenv': This function or variable may be unsafe. Consider using _dupenv_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details. C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Include\stdlib.h(447) : see declaration of 'getenv' c-blosc/blosc\blosc.c(1215) : warning C4996: 'getenv': This function or variable may be unsafe. Consider using _dupenv_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details. C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Include\stdlib.h(447) : see declaration of 'getenv' c-blosc/blosc\blosc.c(1257) : warning C4267: '=' : conversion from 'size_t' to 'int32_t', possible loss of data c-blosc/blosc\blosc.c(1336) : warning C4996: 'getenv': This function or variable may be unsafe. Consider using _dupenv_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details. C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Include\stdlib.h(447) : see declaration of 'getenv' c-blosc/blosc\blosc.c(1348) : warning C4996: 'getenv': This function or variable may be unsafe. Consider using _dupenv_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details. C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Include\stdlib.h(447) : see declaration of 'getenv' c-blosc/blosc\blosc.c(1509) : warning C4101: 'rc' : unreferenced local variable c-blosc/blosc\blosc.c(1720) : warning C4996: 'strerror': This function or variable may be unsafe. Consider using strerror_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details. C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Include\string.h(126) : see declaration of 'strerror' c-blosc/blosc\blosc.c(1805) : warning C4996: 'strcat': This function or variable may be unsafe. Consider using strcat_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details. c-blosc/blosc\blosc.c(1807) : warning C4996: 'strcat': This function or variable may be unsafe. Consider using strcat_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details. c-blosc/blosc\blosc.c(1807) : warning C4996: 'strcat': This function or variable may be unsafe. Consider using strcat_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details. c-blosc/blosc\blosc.c(1808) : warning C4996: 'strcat': This function or variable may be unsafe. Consider using strcat_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details. c-blosc/blosc\blosc.c(1808) : warning C4996: 'strcat': This function or variable may be unsafe. Consider using strcat_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details. c-blosc/blosc\blosc.c(1811) : warning C4996: 'strcat': This function or variable may be unsafe. Consider using strcat_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details. c-blosc/blosc\blosc.c(1811) : warning C4996: 'strcat': This function or variable may be unsafe. Consider using strcat_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details. c-blosc/blosc\blosc.c(1814) : warning C4996: 'strcat': This function or variable may be unsafe. Consider using strcat_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details. c-blosc/blosc\blosc.c(1814) : warning C4996: 'strcat': This function or variable may be unsafe. Consider using strcat_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details. c-blosc/blosc\blosc.c(1823) : warning C4996: 'strcpy': This function or variable may be unsafe. Consider using strcpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details. c-blosc/blosc\blosc.c(1848) : warning C4996: 'sprintf': This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details. C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Include\stdio.h(366) : see declaration of 'sprintf' c-blosc/blosc\blosc.c(1856) : warning C4996: 'sprintf': This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use CRT_SECURE_NO_WARNINGS. See online help for details. C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Include\stdio.h(366) : see declaration of 'sprintf' c-blosc/blosc\blosc.c(1867) : warning C4996: 'strdup': The POSIX name for this item is deprecated. Instead, use the ISO C++ conformant name: strdup. See online help for details. C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Include\string.h(207) : see declaration of 'strdup' c-blosc/blosc\blosc.c(1868) : warning C4996: 'strdup': The POSIX name for this item is deprecated. Instead, use the ISO C++ conformant name: strdup. See online help for details. C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Include\string.h(207) : see declaration of 'strdup' c-blosc/blosc\blosc.c(1994) : warning C4996: 'strerror': This function or variable may be unsafe. Consider using strerror_s instead. To disable deprecation, use CRT_SECURE_NO_WARNINGS. See online help for details. C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Include\string.h(126) : see declaration of 'strerror' c-blosc/blosc\blosc.c(1978) : warning C4101: 'rc' : unreferenced local variable C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Bin\amd64\cl.exe /c /nologo /Ox /MD /W3 /GS- /DNDEBUG -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -D__SSE2=1 -Ibcolz -Ic-blosc\blosc -Ic-blosc/internal-complibs\lz4-1.7.2 -Ic-blosc/internal-complibs\snappy-1.1.1 -Ic-blosc/internal-complibs\zlib-1.2.8 -ID:\eclipse\Anaconda2\lib\site-packages\numpy\core\include -ID:\eclipse\Anaconda2\include -ID:\eclipse\Anaconda2\PC /Tcc-blosc/blosc\blosclz.c /Fobuild\temp.win-amd64-2.7\Release\c-blosc/blosc\blosclz.obj -DSHUFFLE_SSE2_ENABLED blosclz.c c-blosc/blosc\blosclz.c(483) : warning C4244: 'function' : conversion from 'int64' to 'int', possible loss of data C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Bin\amd64\cl.exe /c /nologo /Ox /MD /W3 /GS- /DNDEBUG -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -D__SSE2=1 -Ibcolz -Ic-blosc\blosc -Ic-blosc/internal-complibs\lz4-1.7.2 -Ic-blosc/internal-complibs\snappy-1.1.1 -Ic-blosc/internal-complibs\zlib-1.2.8 -ID:\eclipse\Anaconda2\lib\site-packages\numpy\core\include -ID:\eclipse\Anaconda2\include -ID:\eclipse\Anaconda2\PC /Tcc-blosc/blosc\shuffle-generic.c /Fobuild\temp.win-amd64-2.7\Release\c-blosc/blosc\shuffle-generic.obj -DSHUFFLE_SSE2_ENABLED shuffle-generic.c C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Bin\amd64\cl.exe /c /nologo /Ox /MD /W3 /GS- /DNDEBUG -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -D__SSE2=1 -Ibcolz -Ic-blosc\blosc -Ic-blosc/internal-complibs\lz4-1.7.2 -Ic-blosc/internal-complibs\snappy-1.1.1 -Ic-blosc/internal-complibs\zlib-1.2.8 -ID:\eclipse\Anaconda2\lib\site-packages\numpy\core\include -ID:\eclipse\Anaconda2\include -ID:\eclipse\Anaconda2\PC /Tcc-blosc/blosc\shuffle.c /Fobuild\temp.win-amd64-2.7\Release\c-blosc/blosc\shuffle.obj -DSHUFFLE_SSE2_ENABLED shuffle.c c-blosc/blosc\shuffle.c(127) : error C2054: expected '(' to follow 'inline' c-blosc/blosc\shuffle.c(127) : error C2085: '_xgetbv' : not in formal parameter list c-blosc/blosc\shuffle.c(127) : error C2143: syntax error : missing ';' before '{' c-blosc/blosc\shuffle.c(247) : warning C4013: '_xgetbv' undefined; assuming extern returning int c-blosc/blosc\shuffle.c(411) : warning C4267: 'initializing' : conversion from 'size_t' to 'int', possible loss of data c-blosc/blosc\shuffle.c(432) : warning C4267: 'initializing' : conversion from 'size_t' to 'int', possible loss of data error: command 'C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Bin\amd64\cl.exe' failed with exit status 2
Running setup.py clean for bcolz Failed to build bcolz Installing collected packages: bcolz Running setup.py install for bcolz: started Running setup.py install for bcolz: finished with status 'error' Complete output from command D:\eclipse\Anaconda2\python.exe -u -c "import setuptools, tokenize;file='c:\users\914187\appdata\local\temp\pip-build-3iskin\bcolz\setup.py';exec(compile(getattr(tokenize, 'open', open)(file).read().replace('\r\n', '\n'), file, 'exec'))" install --record c:\users\914187\appdata\local\temp\pip-oy6cbc-record\install-record.txt --single-version-externally-managed --compile: SSE2 detected running install running build running build_py creating build creating build\lib.win-amd64-2.7 creating build\lib.win-amd64-2.7\bcolz copying bcolz\arrayprint.py -> build\lib.win-amd64-2.7\bcolz copying bcolz\attrs.py -> build\lib.win-amd64-2.7\bcolz copying bcolz\chunked_eval.py -> build\lib.win-amd64-2.7\bcolz copying bcolz\ctable.py -> build\lib.win-amd64-2.7\bcolz copying bcolz\defaults.py -> build\lib.win-amd64-2.7\bcolz copying bcolz\py2help.py -> build\lib.win-amd64-2.7\bcolz copying bcolz\py2help_tests.py -> build\lib.win-amd64-2.7\bcolz copying bcolz\toplevel.py -> build\lib.win-amd64-2.7\bcolz copying bcolz\utils.py -> build\lib.win-amd64-2.7\bcolz copying bcolz\version.py -> build\lib.win-amd64-2.7\bcolz copying bcolz__init__.py -> build\lib.win-amd64-2.7\bcolz creating build\lib.win-amd64-2.7\bcolz\tests copying bcolz\tests\all.py -> build\lib.win-amd64-2.7\bcolz\tests copying bcolz\tests\common.py -> build\lib.win-amd64-2.7\bcolz\tests copying bcolz\tests\test_attrs.py -> build\lib.win-amd64-2.7\bcolz\tests copying bcolz\tests\test_carray.py -> build\lib.win-amd64-2.7\bcolz\tests copying bcolz\tests\test_carray_objects.py -> build\lib.win-amd64-2.7\bcolz\tests copying bcolz\tests\test_ctable.py -> build\lib.win-amd64-2.7\bcolz\tests copying bcolz\tests\test_ndcarray.py -> build\lib.win-amd64-2.7\bcolz\tests copying bcolz\tests\test_queries.py -> build\lib.win-amd64-2.7\bcolz\tests copying bcolz\tests__init__.py -> build\lib.win-amd64-2.7\bcolz\tests copying bcolz\carray_ext.pxd -> build\lib.win-amd64-2.7\bcolz running build_ext skipping 'bcolz\carray_ext.c' Cython extension (up-to-date) building 'bcolz.carray_ext' extension creating build\temp.win-amd64-2.7 creating build\temp.win-amd64-2.7\Release creating build\temp.win-amd64-2.7\Release\bcolz creating build\temp.win-amd64-2.7\Release\c-blosc creating build\temp.win-amd64-2.7\Release\c-blosc\blosc creating build\temp.win-amd64-2.7\Release\c-blosc\internal-complibs creating build\temp.win-amd64-2.7\Release\c-blosc\internal-complibs\lz4-1.7.2 creating build\temp.win-amd64-2.7\Release\c-blosc\internal-complibs\snappy-1.1.1 creating build\temp.win-amd64-2.7\Release\c-blosc\internal-complibs\zlib-1.2.8 C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Bin\amd64\cl.exe /c /nologo /Ox /MD /W3 /GS- /DNDEBUG -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -D__SSE2__=1 -Ibcolz -Ic-blosc\blosc -Ic-blosc/internal-complibs\lz4-1.7.2 -Ic-blosc/internal-complibs\snappy-1.1.1 -Ic-blosc/internal-complibs\zlib-1.2.8 -ID:\eclipse\Anaconda2\lib\site-packages\numpy\core\include -ID:\eclipse\Anaconda2\include -ID:\eclipse\Anaconda2\PC /Tcbcolz\carray_ext.c /Fobuild\temp.win-amd64-2.7\Release\bcolz\carray_ext.obj -DSHUFFLE_SSE2_ENABLED carray_ext.c d:\eclipse\anaconda2\lib\site-packages\numpy\core\include\numpy\npy_1_7_deprecated_api.h(12) : Warning Msg: Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION bcolz\carray_ext.c(3585) : warning C4244: '=' : conversion from 'npy_intp' to 'long', possible loss of data bcolz\carray_ext.c(3594) : warning C4244: 'function' : conversion from 'npy_intp' to 'long', possible loss of data bcolz\carray_ext.c(5368) : warning C4267: '=' : conversion from 'size_t' to 'int', possible loss of data bcolz\carray_ext.c(5378) : warning C4267: '=' : conversion from 'size_t' to 'int', possible loss of data bcolz\carray_ext.c(5388) : warning C4267: '=' : conversion from 'size_t' to 'int', possible loss of data bcolz\carray_ext.c(5541) : warning C4267: 'function' : conversion from 'size_t' to 'int', possible loss of data bcolz\carray_ext.c(5801) : warning C4267: 'function' : conversion from 'size_t' to 'int', possible loss of data bcolz\carray_ext.c(10340) : warning C4244: '=' : conversion from 'Py_ssize_t' to 'int', possible loss of data bcolz\carray_ext.c(12348) : warning C4244: 'function' : conversion from 'npy_intp' to 'long', possible loss of data bcolz\carray_ext.c(17997) : warning C4244: '=' : conversion from 'npy_intp' to 'int', possible loss of data bcolz\carray_ext.c(17998) : warning C4244: '=' : conversion from 'npy_intp' to 'int', possible loss of data bcolz\carray_ext.c(21300) : warning C4244: '=' : conversion from 'npy_intp' to 'int', possible loss of data bcolz\carray_ext.c(21322) : warning C4244: '=' : conversion from 'npy_intp' to 'int', possible loss of data bcolz\carray_ext.c(22111) : warning C4244: '=' : conversion from 'npy_intp' to 'int', possible loss of data bcolz\carray_ext.c(25205) : warning C4244: '=' : conversion from 'npy_intp' to 'int', possible loss of data bcolz\carray_ext.c(25378) : warning C4244: '=' : conversion from 'npy_intp' to 'int', possible loss of data bcolz\carray_ext.c(25392) : warning C4244: '=' : conversion from 'npy_intp' to 'int', possible loss of data bcolz\carray_ext.c(25402) : warning C4244: '=' : conversion from 'npy_intp' to 'int', possible loss of data bcolz\carray_ext.c(25478) : warning C4244: '=' : conversion from 'npy_intp' to 'int', possible loss of data bcolz\carray_ext.c(28221) : warning C4244: 'function' : conversion from 'npy_intp' to 'int', possible loss of data bcolz\carray_ext.c(28221) : warning C4244: 'function' : conversion from 'npy_intp' to 'int', possible loss of data bcolz\carray_ext.c(31255) : warning C4244: 'function' : conversion from 'npy_intp' to 'int', possible loss of data bcolz\carray_ext.c(31255) : warning C4244: 'function' : conversion from 'npy_intp' to 'int', possible loss of data bcolz\carray_ext.c(34265) : warning C4244: '=' : conversion from 'npy_intp' to 'int', possible loss of data bcolz\carray_ext.c(34631) : warning C4244: '=' : conversion from 'npy_intp' to 'int', possible loss of data C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Bin\amd64\cl.exe /c /nologo /Ox /MD /W3 /GS- /DNDEBUG -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -D__SSE2__=1 -Ibcolz -Ic-blosc\blosc -Ic-blosc/internal-complibs\lz4-1.7.2 -Ic-blosc/internal-complibs\snappy-1.1.1 -Ic-blosc/internal-complibs\zlib-1.2.8 -ID:\eclipse\Anaconda2\lib\site-packages\numpy\core\include -ID:\eclipse\Anaconda2\include -ID:\eclipse\Anaconda2\PC /Tcc-blosc/blosc\bitshuffle-generic.c /Fobuild\temp.win-amd64-2.7\Release\c-blosc/blosc\bitshuffle-generic.obj -DSHUFFLE_SSE2_ENABLED bitshuffle-generic.c c-blosc/blosc\bitshuffle-generic.c(72) : warning C4244: '=' : conversion from 'int64_t' to 'int8_t', possible loss of data c-blosc/blosc\bitshuffle-generic.c(175) : warning C4244: '=' : conversion from 'int64_t' to 'uint8_t', possible loss of data C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Bin\amd64\cl.exe /c /nologo /Ox /MD /W3 /GS- /DNDEBUG -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -D__SSE2__=1 -Ibcolz -Ic-blosc\blosc -Ic-blosc/internal-complibs\lz4-1.7.2 -Ic-blosc/internal-complibs\snappy-1.1.1 -Ic-blosc/internal-complibs\zlib-1.2.8 -ID:\eclipse\Anaconda2\lib\site-packages\numpy\core\include -ID:\eclipse\Anaconda2\include -ID:\eclipse\Anaconda2\PC /Tcc-blosc/blosc\blosc.c /Fobuild\temp.win-amd64-2.7\Release\c-blosc/blosc\blosc.obj -DSHUFFLE_SSE2_ENABLED blosc.c c-blosc/blosc\blosc.c(468) : warning C4267: 'initializing' : conversion from 'size_t' to 'uLongf', possible loss of data c-blosc/blosc\blosc.c(481) : warning C4267: 'initializing' : conversion from 'size_t' to 'uLongf', possible loss of data c-blosc/blosc\blosc.c(569) : warning C4267: '=' : conversion from 'size_t' to 'int32_t', possible loss of data c-blosc/blosc\blosc.c(811) : warning C4101: 'rc' : unreferenced local variable c-blosc/blosc\blosc.c(944) : warning C4267: '=' : conversion from 'size_t' to 'int32_t', possible loss of data c-blosc/blosc\blosc.c(945) : warning C4267: '=' : conversion from 'size_t' to 'int32_t', possible loss of data c-blosc/blosc\blosc.c(1123) : warning C4267: 'function' : conversion from 'size_t' to 'int32_t', possible loss of data c-blosc/blosc\blosc.c(1151) : warning C4996: 'getenv': This function or variable may be unsafe. Consider using _dupenv_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details. C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Include\stdlib.h(447) : see declaration of 'getenv' c-blosc/blosc\blosc.c(1161) : warning C4996: 'getenv': This function or variable may be unsafe. Consider using _dupenv_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details. C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Include\stdlib.h(447) : see declaration of 'getenv' c-blosc/blosc\blosc.c(1175) : warning C4996: 'getenv': This function or variable may be unsafe. Consider using _dupenv_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details. C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Include\stdlib.h(447) : see declaration of 'getenv' c-blosc/blosc\blosc.c(1185) : warning C4996: 'getenv': This function or variable may be unsafe. Consider using _dupenv_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details. C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Include\stdlib.h(447) : see declaration of 'getenv' c-blosc/blosc\blosc.c(1192) : warning C4996: 'getenv': This function or variable may be unsafe. Consider using _dupenv_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details. C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Include\stdlib.h(447) : see declaration of 'getenv' c-blosc/blosc\blosc.c(1202) : warning C4996: 'getenv': This function or variable may be unsafe. Consider using _dupenv_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details. C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Include\stdlib.h(447) : see declaration of 'getenv' c-blosc/blosc\blosc.c(1215) : warning C4996: 'getenv': This function or variable may be unsafe. Consider using _dupenv_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details. C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Include\stdlib.h(447) : see declaration of 'getenv' c-blosc/blosc\blosc.c(1257) : warning C4267: '=' : conversion from 'size_t' to 'int32_t', possible loss of data c-blosc/blosc\blosc.c(1336) : warning C4996: 'getenv': This function or variable may be unsafe. Consider using _dupenv_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details. C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Include\stdlib.h(447) : see declaration of 'getenv' c-blosc/blosc\blosc.c(1348) : warning C4996: 'getenv': This function or variable may be unsafe. Consider using _dupenv_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details. C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Include\stdlib.h(447) : see declaration of 'getenv' c-blosc/blosc\blosc.c(1509) : warning C4101: 'rc' : unreferenced local variable c-blosc/blosc\blosc.c(1720) : warning C4996: 'strerror': This function or variable may be unsafe. Consider using strerror_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details. C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Include\string.h(126) : see declaration of 'strerror' c-blosc/blosc\blosc.c(1805) : warning C4996: 'strcat': This function or variable may be unsafe. Consider using strcat_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details. c-blosc/blosc\blosc.c(1807) : warning C4996: 'strcat': This function or variable may be unsafe. Consider using strcat_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details. c-blosc/blosc\blosc.c(1807) : warning C4996: 'strcat': This function or variable may be unsafe. Consider using strcat_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details. c-blosc/blosc\blosc.c(1808) : warning C4996: 'strcat': This function or variable may be unsafe. Consider using strcat_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details. c-blosc/blosc\blosc.c(1808) : warning C4996: 'strcat': This function or variable may be unsafe. Consider using strcat_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details. c-blosc/blosc\blosc.c(1811) : warning C4996: 'strcat': This function or variable may be unsafe. Consider using strcat_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details. c-blosc/blosc\blosc.c(1811) : warning C4996: 'strcat': This function or variable may be unsafe. Consider using strcat_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details. c-blosc/blosc\blosc.c(1814) : warning C4996: 'strcat': This function or variable may be unsafe. Consider using strcat_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details. c-blosc/blosc\blosc.c(1814) : warning C4996: 'strcat': This function or variable may be unsafe. Consider using strcat_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details. c-blosc/blosc\blosc.c(1823) : warning C4996: 'strcpy': This function or variable may be unsafe. Consider using strcpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details. c-blosc/blosc\blosc.c(1848) : warning C4996: 'sprintf': This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details. C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Include\stdio.h(366) : see declaration of 'sprintf' c-blosc/blosc\blosc.c(1856) : warning C4996: 'sprintf': This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use CRT_SECURE_NO_WARNINGS. See online help for details. C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Include\stdio.h(366) : see declaration of 'sprintf' c-blosc/blosc\blosc.c(1867) : warning C4996: 'strdup': The POSIX name for this item is deprecated. Instead, use the ISO C++ conformant name: strdup. See online help for details. C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Include\string.h(207) : see declaration of 'strdup' c-blosc/blosc\blosc.c(1868) : warning C4996: 'strdup': The POSIX name for this item is deprecated. Instead, use the ISO C++ conformant name: strdup. See online help for details. C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Include\string.h(207) : see declaration of 'strdup' c-blosc/blosc\blosc.c(1994) : warning C4996: 'strerror': This function or variable may be unsafe. Consider using strerror_s instead. To disable deprecation, use CRT_SECURE_NO_WARNINGS. See online help for details. C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Include\string.h(126) : see declaration of 'strerror' c-blosc/blosc\blosc.c(1978) : warning C4101: 'rc' : unreferenced local variable C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Bin\amd64\cl.exe /c /nologo /Ox /MD /W3 /GS- /DNDEBUG -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -D__SSE2=1 -Ibcolz -Ic-blosc\blosc -Ic-blosc/internal-complibs\lz4-1.7.2 -Ic-blosc/internal-complibs\snappy-1.1.1 -Ic-blosc/internal-complibs\zlib-1.2.8 -ID:\eclipse\Anaconda2\lib\site-packages\numpy\core\include -ID:\eclipse\Anaconda2\include -ID:\eclipse\Anaconda2\PC /Tcc-blosc/blosc\blosclz.c /Fobuild\temp.win-amd64-2.7\Release\c-blosc/blosc\blosclz.obj -DSHUFFLE_SSE2_ENABLED blosclz.c c-blosc/blosc\blosclz.c(483) : warning C4244: 'function' : conversion from 'int64' to 'int', possible loss of data C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Bin\amd64\cl.exe /c /nologo /Ox /MD /W3 /GS- /DNDEBUG -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -D__SSE2=1 -Ibcolz -Ic-blosc\blosc -Ic-blosc/internal-complibs\lz4-1.7.2 -Ic-blosc/internal-complibs\snappy-1.1.1 -Ic-blosc/internal-complibs\zlib-1.2.8 -ID:\eclipse\Anaconda2\lib\site-packages\numpy\core\include -ID:\eclipse\Anaconda2\include -ID:\eclipse\Anaconda2\PC /Tcc-blosc/blosc\shuffle-generic.c /Fobuild\temp.win-amd64-2.7\Release\c-blosc/blosc\shuffle-generic.obj -DSHUFFLE_SSE2_ENABLED shuffle-generic.c C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Bin\amd64\cl.exe /c /nologo /Ox /MD /W3 /GS- /DNDEBUG -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -D__SSE2=1 -Ibcolz -Ic-blosc\blosc -Ic-blosc/internal-complibs\lz4-1.7.2 -Ic-blosc/internal-complibs\snappy-1.1.1 -Ic-blosc/internal-complibs\zlib-1.2.8 -ID:\eclipse\Anaconda2\lib\site-packages\numpy\core\include -ID:\eclipse\Anaconda2\include -ID:\eclipse\Anaconda2\PC /Tcc-blosc/blosc\shuffle.c /Fobuild\temp.win-amd64-2.7\Release\c-blosc/blosc\shuffle.obj -DSHUFFLE_SSE2_ENABLED shuffle.c c-blosc/blosc\shuffle.c(127) : error C2054: expected '(' to follow 'inline' c-blosc/blosc\shuffle.c(127) : error C2085: '_xgetbv' : not in formal parameter list c-blosc/blosc\shuffle.c(127) : error C2143: syntax error : missing ';' before '{' c-blosc/blosc\shuffle.c(247) : warning C4013: '_xgetbv' undefined; assuming extern returning int c-blosc/blosc\shuffle.c(411) : warning C4267: 'initializing' : conversion from 'size_t' to 'int', possible loss of data c-blosc/blosc\shuffle.c(432) : warning C4267: 'initializing' : conversion from 'size_t' to 'int', possible loss of data error: command 'C:\Users\914187\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Bin\amd64\cl.exe' failed with exit status 2
----------------------------------------
Command "D:\eclipse\Anaconda2\python.exe -u -c "import setuptools, tokenize;file='c:\users\914187\appdata\local\temp\pip-build-h_9qf2\bcolz\setup.py';exec(compile(getattr(tokenize, 'open', open)(file).read().replace('\r\n','\n'), file, 'exec'))" install --record c:\users\914187\appdata\local\temp\pip-unomhy-record\install-record.txt --single-version-externally-managed --compile" failed with error code 1 in c:\users\914187\appdata\local\temp\pip-build-h_9qf2\bcolz\
I was using anaconda py2.7 32bit in Win7 before, and the bcolz work fine in 32bit. For memory reason I have to upgrade anaconda to 64bit. Then cannot install bcolz.
py27, 32 https://github.com/Blosc/bcolz/blob/master/appveyor.yml#L29-L33 was commented out (maybe to reduce the time appveyor takes to run) see https://ci.appveyor.com/project/FrancescAlted/bcolz/branch/master Maybe you could bring it back again in a new branch and see if appveyor can reproduce the error, this will at least expose the problem. The next thing would be to make a PR exposing the issue and solving it. I'm pretty sure the PR will be well received.
Installing via conda works.
conda install bcolz
Fetching package metadata .........
Solving package specifications: ..........
Package plan for installation in environment C:\Users\username\AppData\Local\Continuum\Anaconda2:
The following packages will be downloaded:
package | build
---------------------------|-----------------
bcolz-1.0.0 | py27_0 351 KB
The following NEW packages will be INSTALLED:
bcolz: 1.0.0-py27_0
Proceed ([y]/n)? y
Fetching packages ...
bcolz-1.0.0-py 100% |###############################| Time: 0:00:00 1.13 MB/s
Extracting packages ...
[ COMPLETE ]|##################################################| 100%
Linking packages ...
[ COMPLETE ]|##################################################| 100%
