pydna

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Bumps [pytest](https://github.com/pytest-dev/pytest) from 8.1.1 to 8.3.2. Release notes Sourced from pytest's releases. 8.3.2 pytest 8.3.2 (2024-07-24) Bug fixes #12652: Resolve regression [conda]{.title-ref} environments where no longer being automatically detected. --...

dependabot[bot]

Bumps [pyperclip](https://github.com/asweigart/pyperclip) from 1.8.2 to 1.9.0. Commits See full diff in compare view [](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter...

dependabot[bot]

Bumps [requests](https://github.com/psf/requests) from 2.31.0 to 2.32.3. Release notes Sourced from requests's releases. v2.32.3 2.32.3 (2024-05-29) Bugfixes Fixed bug breaking the ability to specify custom SSLContexts in sub-classes of HTTPAdapter. (#6716)...

dependabot[bot]

Bumps [seguid](https://github.com/seguid/seguid-python) from 0.0.7 to 0.1.0. Commits See full diff in compare view [](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter...

dependabot[bot]

User cloning

3

A have a minimal working example of USER cloning, to address #309 As a summary, USER removes the uracil base from a dsDNA leaving an abasic site, that is subsequently...

dgruano

Implement USER cloning

4

We need USER cloning for [this](https://github.com/manulera/ShareYourCloning_backend/issues/63), so @manulera and I thought it would be better to implement it in `pydna`. I have a minimal working example and will write some...

dgruano

Implement Gateway Cloning

1

I saw there was a placeholder file for Gateway cloning and thought to give it a go. Did you have any idea on how to do it @BjornFJohansson?

dgruano

Cannot pass `max_nodes` to `Assembly`

1

Running: ` asm = Assembly((pdonr_plasmid, insert), limit=6, max_nodes=10) ` gives me: ` TypeError: Assembly.__init__() got an unexpected keyword argument 'max_nodes' ` Is this intended, or should we be able to...

dgruano

Release?

1

Hi @BjornFJohansson, I think with all recent bug fixes and improvements to the documentation, we should do a release to pypi. It does not have to be a major release,...

manulera

Bumps [pyparsing](https://github.com/pyparsing/pyparsing) from 3.1.2 to 3.1.4. Changelog Sourced from pyparsing's changelog. Version 3.1.4 - August, 2024 Fixed a regression introduced in pyparsing 3.1.3, addition of a type annotation that referenced...

dependabot[bot]