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New Dseq implementation
Finally almost there with the new Dseq implementation (e12bf12b98fc6e28c675e7985ae9aa2de2cc7fb1).
The new_dseq branch was the former master where I manually lifted in things from the Dseq4 branch, only changing what was absolutely necessary. There is now USER cloning natively supported by a method in the Dseq class.
Four tests currently fail for the assembly2 module:
tests/test_module_assembly2.py .......x....F.............F....FF.............
I commented in the code of test_module_assembly2.py Most of the tests is a failure of a sanity check, but the expected result is still produced.
@manulera Could you have a look at that?