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TCGAbiolinksGUI crashes immediately upon opening in browser

Open NotAPoetButACriminal opened this issue 1 year ago • 0 comments

The RStudio session shows the following code:

TCGAbiolinksGUI() The name provided ('picture-o') does not correspond to a known icon The name provided ('picture-o') does not correspond to a known icon The name provided ('picture-o') does not correspond to a known icon The name provided ('picture-o') does not correspond to a known icon The name provided ('picture-o') does not correspond to a known icon The name provided ('picture-o') does not correspond to a known icon The name provided ('picture-o') does not correspond to a known icon The name provided ('picture-o') does not correspond to a known icon The name provided ('picture-o') does not correspond to a known icon The name provided ('picture-o') does not correspond to a known icon The name provided ('picture-o') does not correspond to a known icon The name provided ('file-text-o') does not correspond to a known icon The name provided ('floppy-o') does not correspond to a known icon The name provided ('picture-o') does not correspond to a known icon The name provided ('picture-o') does not correspond to a known icon The name provided ('picture-o') does not correspond to a known icon The name provided ('picture-o') does not correspond to a known icon The name provided ('picture-o') does not correspond to a known icon The name provided ('picture-o') does not correspond to a known icon The name provided ('picture-o') does not correspond to a known icon The name provided ('picture-o') does not correspond to a known icon The name provided ('file-pdf-o') does not correspond to a known icon The name provided ('picture-o') does not correspond to a known icon The name provided ('picture-o') does not correspond to a known icon The name provided ('floppy-o') does not correspond to a known icon The name provided ('picture-o') does not correspond to a known icon Warning: Error in if: the condition has length > 1 49: survivalplotdata [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/survival.R#28] 48: observe [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/survival.R#72] 47: 4: shiny::runApp 1: TCGAbiolinksGUI Warning: Error in if: the condition has length > 1 49: survivalplotdata [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/survival.R#28] 48: observe [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/survival.R#84] 47: 4: shiny::runApp 1: TCGAbiolinksGUI Warning: Error in if: the condition has length > 1 49: survivalplotdata [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/survival.R#28] 48: observe [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/survival.R#99] 47: 4: shiny::runApp 1: TCGAbiolinksGUI Warning: Error in if: the condition has length > 1 48: observe [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/volcano.R#97] 47: 4: shiny::runApp 1: TCGAbiolinksGUI Warning: Error in if: the condition has length > 1 65: reactive:volcanodata [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/volcano.R#58] 49: volcanodata 48: observe [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/volcano.R#107] 47: 4: shiny::runApp 1: TCGAbiolinksGUI Warning: Error in if: the condition has length > 1 66: reactive:heatmapdata [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/heatmap.R#158] 50: heatmapdata 48: observe [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/heatmap.R#98] 47: 4: shiny::runApp 1: TCGAbiolinksGUI Warning: Error in if: the condition has length > 1 48: observe [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/heatmap.R#108] 47: 4: shiny::runApp 1: TCGAbiolinksGUI Warning: Error in if: the condition has length > 1 51: <Anonymous> 50: stop 49: heatmapdata 48: observe [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/heatmap.R#118] 47: 4: shiny::runApp 1: TCGAbiolinksGUI Warning: Error in if: the condition has length > 1 51: <Anonymous> 50: stop 49: heatmapdata 48: observe [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/heatmap.R#124] 47: 4: shiny::runApp 1: TCGAbiolinksGUI Warning: Error in if: the condition has length > 1 4: shiny::runApp 1: TCGAbiolinksGUI Warning: Error in if: the condition has length > 1 52: <Anonymous> 51: stop 50: dmrdata 48: observe [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/dmr.R#36] 47: 4: shiny::runApp 1: TCGAbiolinksGUI Warning: Error in if: the condition has length > 1 66: reactive:meandata [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/meanMet.R#147] 50: meandata 48: observe [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/meanMet.R#26] 47: 4: shiny::runApp 1: TCGAbiolinksGUI Warning: Error in if: the condition has length > 1 52: <Anonymous> 51: stop 50: meandata 48: observe [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/meanMet.R#36] 47: 4: shiny::runApp 1: TCGAbiolinksGUI Warning: Error in if: the condition has length > 1 4: shiny::runApp 1: TCGAbiolinksGUI Warning: Error in if: the condition has length > 1 4: shiny::runApp 1: TCGAbiolinksGUI Warning: Error in if: the condition has length > 1 50: deadata [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/dea.R#163] 48: observe [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/dea.R#197] 47: 4: shiny::runApp 1: TCGAbiolinksGUI Warning: Error in h: error in evaluating the argument 'x' in selecting a method for function 'unique': the condition has length > 1 67: reactive:mut.oncoprint [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/oncoprint.R#128] 51: mut.oncoprint 48: observe [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/oncoprint.R#86] 47: 4: shiny::runApp 1: TCGAbiolinksGUI Warning: Error in h: error in evaluating the argument 'x' in selecting a method for function 'colnames': the condition has length > 1 67: reactive:annotation.maf [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/oncoprint.R#110] 51: annotation.maf 48: observe [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/oncoprint.R#90] 47: 4: shiny::runApp 1: TCGAbiolinksGUI Warning: Error in if: the condition has length > 1 65: reactive:maedata [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/elmer.R#344] 49: maedata 48: observe [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/elmer.R#192] 47: 4: shiny::runApp 1: TCGAbiolinksGUI Warning: Error in if: the condition has length > 1 4: shiny::runApp 1: TCGAbiolinksGUI Warning: Error in if: the condition has length > 1 4: shiny::runApp 1: TCGAbiolinksGUI Warning: Error in if: the condition has length > 1 65: reactive:elmer.results.data [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/elmer.R#331] 49: elmer.results.data 48: observe [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/elmer.R#357] 47: 4: shiny::runApp 1: TCGAbiolinksGUI Warning: Error in if: the condition has length > 1 4: shiny::runApp 1: TCGAbiolinksGUI Warning: Error in if: the condition has length > 1 52: <Anonymous> 51: stop 50: elmer.results.data 48: observe [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/elmer.R#384] 47: 4: shiny::runApp 1: TCGAbiolinksGUI Warning: Error in if: the condition has length > 1 52: <Anonymous> 51: stop 50: elmer.results.data 48: observe [/home/djordjep/R/x86_64-pc-linux-gnu-library/4.2/TCGAbiolinksGUI/app/server/elmer.R#406] 47: 4: shiny::runApp 1: TCGAbiolinksGUI

NotAPoetButACriminal avatar Jan 26 '23 09:01 NotAPoetButACriminal