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TARGET-AML GDCprepare issue

Open Nshriwash opened this issue 1 year ago • 0 comments

I ran the following code to download TARGET-AML dataset :

query.exp <- GDCquery( project = "TARGET-AML", data.category = "Transcriptome Profiling", data.type = 'Gene Expression Quantification', workflow.type = "STAR - Counts" ) #remove duplicated query.exp$results[[1]] <- query.exp$results[[1]][!duplicated(query.exp$results[[1]]$cases),]

GDCdownload(query.exp) se <- GDCprepare( query.exp)

I got the error: => Add clinical information to samples Error in .rowNamesDF<-(x, value = value) : invalid 'row.names' length

How to solve this problem? I am using TCGAbiolinks version 2.27.2 and R version 4.3

Nshriwash avatar Apr 25 '23 21:04 Nshriwash