TCGAbiolinks
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Delta column of TCGAanalyze_LevelTab function is misleading / buggy
Hello, the Delta column of the function is explained as the difference of gene expression between the two conditions multiplied logFC
, but the code written shows the delta value as the gene expression of first condition multiplied logFC
. I manually computed the values for delta and the former explanation seems to be true. Please clarify the same.
https://github.com/BioinformaticsFMRP/TCGAbiolinks/blob/0d5a1e689a81a16ad71abf2fb2ed4a117b4fc732/R/analyze.R#L1406