GenomicDataCommons
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OncoPrint section not working in somatic_mutations.Rmd
Hi Sean, @seandavi
It looks like query in the somatic_mutations.Rmd
file
would need to get updated to something like:
fnames = files() %>%
GenomicDataCommons::filter(
cases.project.project_id=='TCGA-SKCM' &
data_format=='MAF' &
data_type=='Annotated Somatic Mutation' &
analysis.workflow_type=='MuTect2 Annotation') %>%
ids() %>%
gdcdata()
BUT I get an error:
Error in (function (uri, destination, overwrite, progress, token = NULL, :
Forbidden (HTTP 403).
Is this accessing restricted data?