GenomeInfoDb
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Provide a complete mapping of UCSC chromosome names to Ensembl
@ivanek opened an issue over at ensembldb
(https://github.com/jotsetung/ensembldb/issues/88).
ensembldb
in general uses the genomeStyles
function from GenomeInfoDb
to map chromosome names. As of now we can only map the standard chromosome names from UCSC to Ensembl. It would also be nice to be able to map names for patched chromosomes etc. Eventually Robert's solution mentioned over at the ensembldb
issue might be a starting point?