GenomicFeatures.jl

GenomicFeatures.jl copied to clipboard

custom ordering of chromosomes

1

Hello, having a custom ordering of chromosomes seems to be quite painful at the moment. I've had to overwrite/extend many of the methods from GenomicFeatures and Indexes as they have...

rulixxx

Ordering of genomic intervals only works as expected when parameterised by the same type

2

Comparison of intervals `isless`, `isordered`, `precedes` of intervals is defined for intervals with identical type parameters for their metadata, for example: `Base.isless(a::Interval{T}, b::Interval{T}, seqname_isless::Function=isless) where T` This causes some surprises...

owensnick

can you add a function merge?

6

Although it's a small problem, merging adjacent intervals still requires a lot of code. Can you provide such a function

panxiaoguang

default values for Vector{Strand}

1

Could `similar` on an array of `Strand` object be initialized as an array of STRAND_NA?

phaverty

This is a simple change that avoids a warning about an unused parameter where clause.

camilogarciabotero