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requesting bedtools,samtools,ucsc-bedgraphtobigwig

Open tamuanand opened this issue 1 year ago • 4 comments

bedtools=2.31.0,samtools=1.17,ucsc-bedgraphtobigwig=447

tamuanand avatar Aug 25 '23 09:08 tamuanand

Hi @bgruening

The build fails with this message

[Aug 25 09:11:16] SOUT └─ ucsc-bedgraphtobigwig 447**  does not exist (perhaps a typo or a missing channel).
[Aug 25 09:11:16] ERRO Task processing failed: Unexpected exit code [1] of container [0b33c8b4d276 step-91e56cb114], container preserved

However, it does exist - https://anaconda.org/bioconda/ucsc-wigtobigwig/files

Any ideas?

Thanks.

tamuanand avatar Aug 25 '23 09:08 tamuanand

You link goes to wigtobigwig but you want bedgraph?

bgruening avatar Aug 25 '23 10:08 bgruening

Hi @bgruening

In PR 2727, I could get it to work with version 377.

Yes, for different purpose, I need wigToBigWig,-and I am working on it

Thanks.

tamuanand avatar Aug 25 '23 15:08 tamuanand

Let me know how I can help.

bgruening avatar Aug 26 '23 12:08 bgruening