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container request: PennCNV

Open D0g4 opened this issue 4 years ago • 3 comments

Dear dev community,

Would you consider building a container for PennCNV tool? Briefly, it is a free software tool for Copy Number Variation (CNV) detection from SNP genotyping arrays, and can handle raw array data from both Illumina and Affymetrix platforms. About their installation webpage: http://penncnv.openbioinformatics.org/en/latest/user-guide/install/

Thanks for considering it!

D0g4 avatar Feb 04 '21 14:02 D0g4

Hi, you should first consider adding the Docker recipe yourself to the repository via a pull request :-)

if not familiar, you can use biocontainers.pro help pages and mostly use other containers examples.

osallou avatar Feb 04 '21 14:02 osallou

Or simply use the one the authors created: http://penncnv.openbioinformatics.org/en/latest/user-guide/install/#using-docker-image-for-penncnv

rsettlage avatar Feb 16 '21 13:02 rsettlage

needs however minor updates to add biocontainers related metadata

osallou avatar Feb 16 '21 13:02 osallou