cgview: Can't locate Bio/SeqIO.pm in @INC

[sk-sahu]

Tried two new images quay.io/biocontainers/cgview:1.0--5 quay.io/biocontainers/cgview:1.0--4

Same issue:

Digest: sha256:c824eff236de755b06805a02df35f58c67d3aa4c73c09fb7dce3742336ab57f3
  Status: Downloaded newer image for quay.io/biocontainers/cgview:1.0--4
  Can't locate Bio/SeqIO.pm in @INC (you may need to install the Bio::SeqIO module) (@INC contains: /usr/local/lib/site_perl/5.26.2/x86_64-linux-thread-multi /usr/local/lib/site_perl/5.26.2 /usr/local/lib/5.26.2/x86_64-linux-thread-multi /usr/local/lib/5.26.2 .) at /usr/local/bin/cgview_xml_builder.pl line 17.
  BEGIN failed--compilation aborted at /usr/local/bin/cgview_xml_builder.pl line 17.

[sk-sahu]

Seems like Perl was bumped for this https://github.com/bioconda/bioconda-recipes/issues/19246 in last December. But why still the image has this issue. Any idea?

[osallou]

Seems there was an expected fix in 1.0--5 in conda but seems not to work. You should fill an issue in bioconda, as container is built from conda package. Once fixed in conda, you'll get related container version.