BilyanaStoilova

What is the correct input bam for Strelka2

9

Hi, I ran Strelka2 with the default parameters for WES and after running Manta: configureStrelkaSomaticWorkflow.py \ --normalBam CM0403_1-control.md.bam \ --tumorBam CM0403_1-tumour.md.bam \ --referenceFasta Homo_sapiens_assembly38.fasta \ --indelCandidates ./Manta_CM0403_1/results/variants/candidateSmallIndels.vcf.gz \ --callRegions SureSelect_Human_All_Exon_V6_r2/S07604514_Padded_full_hg38_sorted.bed.gz...