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KeyError: '40075' Easy coassembly binning mode

Open gabrieleghiotto opened this issue 5 months ago • 2 comments

Hi, I reported the following error.

2024-02-07 10:09:00 rasputin SemiBin[3664292] INFO Training model and clustering. 2024-02-07 10:09:01 rasputin SemiBin[3664292] INFO Start training from one sample. 2024-02-07 10:09:13 rasputin SemiBin[3664292] INFO Training model... 0%| | 0/15 [05:43<?, ?it/s] Traceback (most recent call last): File "/home/bioinfo/anaconda3/envs/semibin2/bin/SemiBin", line 10, in sys.exit(main1()) ^^^^^^^ File "/home/bioinfo/anaconda3/envs/semibin2/lib/python3.12/site-packages/SemiBin/main.py", line 1514, in main1 main2(args, is_semibin2=False) File "/home/bioinfo/anaconda3/envs/semibin2/lib/python3.12/site-packages/SemiBin/main.py", line 1481, in main2 single_easy_binning( File "/home/bioinfo/anaconda3/envs/semibin2/lib/python3.12/site-packages/SemiBin/main.py", line 1162, in single_easy_binning training(logger, [args.contig_fasta], File "/home/bioinfo/anaconda3/envs/semibin2/lib/python3.12/site-packages/SemiBin/main.py", line 1001, in training model = train( ^^^^^^ File "/home/bioinfo/anaconda3/envs/semibin2/lib/python3.12/site-packages/SemiBin/semi_supervised_model.py", line 218, in train train_input_1.append(train_data_input[contig2ix[str(link[0])]]) ~~~~~~~~~^^^^^^^^^^^^^^ KeyError: '40075'

SemiBinRun.log

I attached also the log file. Could you please provide suggestion on how to solve it?

Best, Gabriele

gabrieleghiotto avatar Feb 07 '24 15:02 gabrieleghiotto