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Feature request: implement "circular aware" binning

Open luispedro opened this issue 2 years ago • 0 comments

It would be great if the user could provide the list of circular contigs to avoid creation of spurious bins. — https://twitter.com/fplazaonate/status/1603366542825119746

"Circular-aware" binning is a simple but important feature for long-read assemblies - circular contig MAG recovery can increase by 66%! We first noticed this issue in the hifiasm-meta paper, and @0xfxfxf describes other possible solutions here: https://arxiv.org/abs/2210.00098 — https://twitter.com/DPortik/status/1603412513915228161

luispedro avatar Dec 16 '22 09:12 luispedro