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Add further Dimensionality Reduction Algorithms

Open Cryaaa opened this issue 2 years ago • 1 comments

Some more dimensionality reduction algorithms might be interesting for exploring other visualisations:

  • [ ] Diffusion maps: might be interesting since used in other developmental biology projects. Implementation here with MIT license
  • [x] ISOMAP and MDS: both in sklearn: easy implementation
  • [ ] SPRING plots (come from scSeq analysis and are more suited for continuums of expression states)
  • [ ] others? I'm open to suggestions here

Cryaaa avatar May 03 '22 08:05 Cryaaa

Added ISOMAP and MDS in #187

lazigu avatar Mar 02 '23 16:03 lazigu