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Ten Quick Tips for Deep Learning in Biology

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**Have you checked the [list of proposed rules](https://github.com/Benjamin-Lee/deep-rules/issues?q=is%3Aissue+is%3Aopen+label%3Arule. ) to see if the rule has already been proposed?** - [X] Yes **Feel free to elaborate, rant, and/or ramble.** **Any citations...

Tip

Oftentimes, deep learning is not the best approach. I think one rule (possibly even the first in the article) should be a warning against using DL when it's not needed.

Tip

**Have you checked the [list of proposed rules](https://github.com/Benjamin-Lee/deep-rules/issues?q=is%3Aissue+is%3Aopen+label%3Arule) to see if the rule has already been proposed?** - [x] Yes **Did you add yourself as a [contributor](https://github.com/Benjamin-Lee/deep-rules/blob/master/contributors.md) by making a...

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**Have you checked the [list of proposed rules](https://github.com/Benjamin-Lee/deep-rules/issues?q=is%3Aissue+is%3Aopen+label%3Arule) to see if the rule has already been proposed?** - [x] Yes **Did you add yourself as a [contributor](https://github.com/Benjamin-Lee/deep-rules/blob/master/contributors.md) by making a...

Tip

**Have you checked the [list of proposed rules](https://github.com/Benjamin-Lee/deep-rules/issues?q=is%3Aissue+is%3Aopen+label%3Arule) to see if the rule has already been proposed?** - [X] Yes **Feel free to elaborate, rant, and/or ramble.** **Any citations for...

Tip

**Have you checked the [list of proposed rules](https://github.com/Benjamin-Lee/deep-rules/issues?q=is%3Aissue+is%3Aopen+label%3Arule) to see if the rule has already been proposed?** - [x] Yes **Feel free to elaborate, rant, and/or ramble.** Alternative heading: Garbage...

Tip

Often we lack a large amount of labeled data, but sometimes there are abundant unlabeled data. We could touch on pre-training approaches (autoencoder pre-training, etc) as well as transfer +...

Tip

**Have you checked the [list of proposed rules](https://github.com/Benjamin-Lee/deep-rules/issues?q=is%3Aissue+is%3Aopen+label%3Arule) to see if the rule has already been proposed?** - [x] Yes Many machine learning application tolerate black-box models; however, research in...

Tip

**Have you checked the [list of proposed rules](https://github.com/Benjamin-Lee/deep-rules/issues?q=is%3Aissue+is%3Aopen+label%3Arule) to see if the rule has already been proposed?** - [x] Yes This rule is related to @ttriche's comments in #5. Because...

Tip

Scientists should strive for balance in the training, tuning, and testing datasets to assure that different phenotypic groups are represented appropriately/similarly. This refers to the balanced proportion of different classes...

Tip