guacamol icon indicating copy to clipboard operation
guacamol copied to clipboard

How the FCD value changes with the sample size of the reference molecule set and the padding length

Open hogru opened this issue 3 months ago • 0 comments

This is actually not an issue, but a type of "might be useful to know". This graph shows the effect of two variables on the FCD value: the sample size of the molecule reference set (GuacaMol uses 10,000 afaik) and the padding length of the molecules before they go into the ChemNet model (fcd uses 350). A bit more background is in this repo: https://github.com/hogru/GuacaMolEval

Main result/diagram: https://github.com/hogru/GuacaMolEval/blob/main/figures/fcd_values.jpg

hogru avatar Mar 27 '24 16:03 hogru