Benchmark-Models-PEtab
Benchmark-Models-PEtab copied to clipboard
Include objective function values and gradients at nominal parameter values
As mentioned in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/issues/208, I think the relevance of this repository could be increased further, by including objective function values and gradients at the provided nominal parameter values, supporting its use a PEtab integration test suite.
I would like to include:
- the likelihood (potentially for each individual simulation condition + total)
- the prior
- the unnormalized posterior
- the respective gradients
- ...?
The specific format is to be discussed. I'd suggest using some easily extendable json/yaml file in each problem directory.
I could provide the results from pypesto/amici. Would somebody be willing to do the same using another tool for validation?