crossbow
crossbow copied to clipboard
Errors in sorting
Hello, I'm getting the following error when run soapsnp:
...
Processing TRINITY_DN154966_c175_g1_i1
Processing TRINITY_DN268204_c0_g1_i1
Processing TRINITY_DN171129_c3_g1_i1
Processing TRINITY_DN167603_c3052_g26_i1
Processing TRINITY_DN172399_c1264_g1_i2
Processing TRINITY_DN154966_c440_g2_i1
Processing TRINITY_DN143030_c98_g1_i1
Processing TRINITY_DN170398_c2_g3_i1
Processing TRINITY_DN166585_c2299_g1_i2
Errors in sorting:1183<1220
My command line is the following:
./soapsnp -i '/home/me/SNP/Programs/soap2.21release/alinhamento chrN/teste4' -d '/home/me/SNP/Programs/soap2.21release/Reference genome/todos_um_e_dois.fasta' -o /home/me/SNP/Programs/soap2.21release/teste4consensus -r 0.05 -t -u -L 400 -M /home/me/SNP/Programs/soap2.21release/teste4matrix -m
How do I solve this issue?