Conda version does not work with most recent tbb version

[bkille]

Not sure if this issue is better placed on the bioconda issue board, but the most recent version of TBB (v2021.1.1) causes a runtime error with the bowtie2-align-s binary available on bioconda.

bowtie2 --version
/home/bkille/packages/miniconda3/bin/bowtie2-align-s: error while loading shared libraries: libtbb.so.2: cannot open shared object file: No such file or directory
(ERR): Description of arguments failed!
Exiting now ...

On another machine I obtained the error

bowtie2 -h
/scratch1/bkille/software/miniconda3/bin/bowtie2-align-s: symbol lookup error: /scratch1/bkille/software/miniconda3/bin/bowtie2-align-s: undefined symbol: _ZN3tbb10interface78internal15task_arena_base19internal_initializeEv

The issue was fixed on both systems by reverting tbb to the previous version tbb=2020.2

[dyinboisry4u]

I met the same problem and reverting to the previous version can fix. thanks

[joreynajr]

I actually tried to downgrade to tbb=2020.2 but this didn't solve my issue and I'm not sure where to go from here, any ideas?

[hickman-santini]

Can you specify what version (tbb-2020.2-xxxx)? I encountered the same problem, but I'm not finding a way to downgrade to 2020.2, only can downgrade as far as 2020.3-2...

[bkille]

conda install tbb=2020.2 did the trick for me. What happens when you try that?

[sgraindorge]

Hi ! I had the same issue. conda install tbb=2020.2 worked for me also !!! Thanks a lot for your help ;)

[hickman-santini]

conda install tbb=2020.2 did the trick for me. What happens when you try that?

Thank you @bkille I'm not sure what I was doing before; that worked for me! :)

[Kinggerm]

Why does it not fixed by https://github.com/bioconda/bioconda-recipes/pull/27174?

[bioinfo-guy]

Same here, downgrading TBB solve the problem.

[zyzyzyzyh]

conda install tbb=2020.2 worked for me. finally can run tophat now after having tophat error for a week

[jpeasari]

Thank you. It worked for me.

[alexrootcode]

Thank you, it worked for me as well

[ch4rr0]

I will be closing this issue since it seems to have been resolved.