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Why k-mer=31 was not considered in kraken2 db?

Open LilyAnderssonLee opened this issue 1 year ago • 0 comments

Hi, thanks for providing this very valuable resources. I am wondering why default k-mer = 31 was not considered in kraken2 databases. To avoid high false positives?

For Illumina short-gun metagenomic data, I guess 50 and 70 are two common ones used during the classifications. Do you think k-mer = 31 will improve the performance of the classification?

LilyAnderssonLee avatar Nov 28 '23 11:11 LilyAnderssonLee