Issue with --no-fil-flat

[lucasinchausti]

Hello,

I'm trying clust but it seems I can't get de --no-fil-flat option for avoid gene filtering during pre-processing steps.

This is my line of code: $ clust input_file.txt --no-fil-flat -n0 -t 2 -cs 50 -o clust_7

Note: my input file is already normalized and consists of 10338 genes

And this is the output: /===========================================================================
| Clust | | (Optimised consensus clustering of multiple heterogenous datasets) | | Python package version 1.17.0 (2022) Basel Abu-Jamous | +---------------------------------------------------------------------------+ | Analysis started at: Thursday 27 April 2023 (19:09:25) | | 1. Reading dataset(s) | | 2. Data pre-processing | | 3. Seed clusters production (the Bi-CoPaM method) | | 10% | | 20% | | 30% | | 40% | | 50% | | 60% | | 70% | | 80% | | 90% | | 100% | | 4. Cluster evaluation and selection (the M-N scatter plots technique) | | 10% | | 20% | | 30% | | 40% | | 50% | | 60% | | 70% | | 80% | | 90% | | 100% | | 5. Cluster optimisation and completion | | 6. Saving results in | | clust_7 | +---------------------------------------------------------------------------+ | Analysis finished at: Thursday 27 April 2023 (19:14:08) | | Total time consumed: 0 hours, 4 minutes, and 42 seconds | | | ===========================================================================/

/===========================================================================
| RESULTS SUMMARY | +---------------------------------------------------------------------------+ | Clust received 1 dataset with 10338 unique genes. After filtering, 10338 | | genes made it to the clustering step. Clust generated 3 clusters of | | genes, which in total include 3463 genes. The smallest cluster includes | | 357 genes, the largest cluster includes 2575 genes, and the average | | cluster size is 1154 genes. | +---------------------------------------------------------------------------+

Thanks!

Lucas