Bastien Hervé

Hello, I was using your soft under 1.6.9, with option -d allowing to retrieve tracks after a given date, but I cannot find this option in your 1.6.12 version. I...

Display 2 different chromosome scales on the same plotKaryotype

3

Outstanding package to fit LAM-HTGTS method results other than Circos plot ! I have a request that I already post on Biostars (https://www.biostars.org/p/306637/). I don't want to duplicate my post...

Highly related to [#324](https://github.com/lmcinnes/umap/issues/324) ``` --------------------------------------------------------------------------- TypingError Traceback (most recent call last) /tmp/ipykernel_14654/1959688638.py in ----> 1 rows, cols, vals, dists = compute_membership_strengths( 2 knn_indices, knn_dists, sigmas, rhos, return_dists 3 )...

Consistency across computers/environments

3

Hi, due to Covid19 situation I am working part time at the lab and at home. At the lab I am working under an HP workstation linux environment and at...

Get aData object to process MELD graph parameters

2

Super interesting work and congratulations for the Nature Biotech ! I am trying to run your in depth tutorial on my own dataset and as recommended in your notebook, one...

Export bigwig files from split fragments file

11

This pull request is answering this enhancement : https://github.com/stuart-lab/signac/issues/28 Most of the code is coming from [ArchR](https://www.archrproject.com/reference/getGroupBW.html), I rewrote it for a Signac object. Addition of `ExportGroupBW`, `CreateBWGroup` and `%bcin%`...