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Compatibility with Biopython

Open anikapatel999 opened this issue 5 months ago • 0 comments

I am currently using Biopython version 1.77. When importing Janggu, I get the following error: ImportError: Bio.Alphabet has been removed from Biopython. In many cases, the alphabet can simply be ignored and removed from scripts. In a f ew cases, you may need to specify the molecule_type as an annotation on a SeqRecord for your script to work correctly. Please see http s://biopython.org/wiki/Alphabet for more information. Downgrading Biopython creates a conflict with Janggu. Do you have any recommendations on how to handle this? Thank you!!

anikapatel999 avatar Jan 27 '24 17:01 anikapatel999