add seqlengths argument to ScoreMatrixList and ScoreMatrix

[frenkiboy]

When the targets are GRaneges, the resulting Rle can have different lengths, resulting in some windows being dropped in a certain set

[al2na]

I think this should be a additional feature, we shouldn't force users to have seqlengths in their GRanges objects. I guess we are on the same page on this, but wanted to make sure

On Mon, Mar 30, 2015 at 3:54 PM, frenkiboy [email protected] wrote:

When the targets are GRaneges, the resulting Rle can have different lengths, resulting in some windows being dropped in a certain set

— Reply to this email directly or view it on GitHub https://github.com/BIMSBbioinfo/genomation/issues/87.

[frenkiboy]

yeah yeah, it should be a provisional feature, not obligatory

On Mon, Mar 30, 2015 at 3:57 PM, al2na [email protected] wrote:

I think this should be a additional feature, we shouldn't force users to have seqlengths in their GRanges objects. I guess we are on the same page on this, but wanted to make sure

On Mon, Mar 30, 2015 at 3:54 PM, frenkiboy [email protected] wrote:

When the targets are GRaneges, the resulting Rle can have different lengths, resulting in some windows being dropped in a certain set

— Reply to this email directly or view it on GitHub https://github.com/BIMSBbioinfo/genomation/issues/87.

— Reply to this email directly or view it on GitHub https://github.com/BIMSBbioinfo/genomation/issues/87#issuecomment-87689702 .