visualzation for RRBS data

[alexyfyf]

Hi,

I'm currently using your package to visualize the RRBS data, following an example from here.

Although some of the original links doesn't work now. I managed to manual download the data and input into R.

However, I get stuck when I want to use plotMeta and plotTargetAnnotation. I found the result are very different from this example in RRBS but not WGBS data. See figure 1 and 2

The curves for RRBS in plotMeta are always below WGBS, which doesn't make sense to me. Also the annotation showed almost no overlap with promoter for RRBS, and largely intergenic, and using findOverlaps also confirmed there are very little overlap between rrbs.H1 and transcriptFeat$promoters.

I hope you can have a look and help me with this. I want to use this package in our RRBS data, but this sanity check seems not working. The code is also attached here.

Cheers,