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list of score matrices not printed out correctly to terminal
Not sure if this is a problem with genomation or some R "feature":
If I have a list of score matrices the printout of the list (when typed the name of the list and pressed enter; not sure which function is called), then the dimensions of the score matrices come async with the indices of the list, e.g.:
> myScoreMatrix
[[1]]
[[2]]
scoreMatrix with dims: 2749 1601
scoreMatrix with dims: 246 1601
[[3]]
[[4]]
scoreMatrix with dims: 653 1601
scoreMatrix with dims: 200 1601
[[5]]
scoreMatrix with dims: 1048 1601
What I expect to happen is a listing in synchro, e.g.:
> list(GRanges("A", IRanges(1, 6)), "foo", 1:6)
[[1]]
GRanges object with 1 range and 0 metadata columns:
seqnames ranges strand
<Rle> <IRanges> <Rle>
[1] A 1-6 *
-------
seqinfo: 1 sequence from an unspecified genome; no seqlengths
[[2]]
[1] "foo"
[[3]]
[1] 1 2 3 4 5 6