OpenABM-Covid19
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Zero tests recorded if hospitalisation fraction set to zero
The n_tests
column of the time series records zero tests if hospitalisation fraction is zero in all age groups (total infected added as a superfluous variable in case --showlocals
is flagged in pytest to highlight that infection is occurring). This test fails (if put in test_interventions.py
, for instance), whereas I would have expected it to have passed.
def test_testing_outside_hospitalisation( self ):
"""
Check there can be testing outside of hospitalisation
"""
params = utils.get_params_swig()
params.set_param("n_total", 50000)
params.set_param( "infectious_rate", 7.25 )
# Set hospitalisation fraction to zero in all age groups
utils.set_hospitalisation_fraction_all(params, 0)
# Give everyone the app and all interactions are traceable
params.set_param("traceable_interaction_fraction", 1)
utils.set_app_users_fraction_all(params, 1)
params.set_param( "test_on_symptoms", 1 )
model = utils.get_model_swig( params )
model.one_time_step()
model.update_running_params("app_turned_on", 1 )
model.update_running_params("trace_on_symptoms", 1)
model.update_running_params("trace_on_positive", 1)
model.update_running_params("test_on_traced", 1)
n_tests = []; total_infected = []
for time in range( 60 ):
model.one_time_step()
n_tests.append(model.one_time_step_results()["n_tests"])
total_infected.append(model.one_time_step_results()["total_infected"])
total_tests = np.sum(n_tests)
final_infected = total_infected[-1]
np.testing.assert_equal( total_tests > 0, True )