signalAlign
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ArtRand
HMM-HDP models for MinION signal alignments
``` ~/signalAlign$ pip install serviceCourse ERROR: Could not find a version that satisfies the requirement serviceCourse (from versions: none) ERROR: No matching distribution found for serviceCourse ~/signalAlign$ make test #cd...
Looking to use this for a paper. Would love to use it but having trouble with installation. I see the requirements are old versions so I would like to know...
Hi, the Debian Med team is running a COVID-19 sprint currently and signalAlign came on the list of interesting packages for inclusion into official Debian. It would help if you...
Hi, I want to know that methylation levels of insertions of the input sample can be called by signalAlign. Or only CpGs within reference genome can be called thier methylation...
Hi @ArtRand , @mitenjain ,I followed your tutorial and got methylation call probabilities files for each read. My question is how to convert these methylation call probabilities files to methylation...
Hi @mitenjain and @ArtRand , This might be a silly question, bu I was wondering do we need albacore fast5 base called files or they just needed for the extract...
Dear authors, I downloaded the dataset for Escherichia coli MG1655 https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR5219626 which says on the description that it contains the PCR amplified reads. Where can I obtain data for the...
Hi @ArtRand and @mitenjain , I have FAST5 files base called by guppy. Does signal align accepts guppy_base called fast5 files? or is it going to accept guppy base called...
Hi Art, I'm trying to call methylation sites in the ecoli test data but there are no results in the output directory. I took out the --twoWay flag, since it...
Hi, I have run signalAlign from source and also using the docker option. However, it is only creating the tempFiles_alignment directory. I have checked that bwa is installed in the...
