Arthur Rand
Arthur Rand
Hello @OberonDixon, Nice to hear from you. These all seem like good suggestions. I'll send you a test build once I have it. Thanks!
Hello @OberonDixon, sorry for the delay. Within a week or so - sorry for the delay.
Hello @OberonDixon You'll have it this week. Looking forward to the preprint.
Hello @OberonDixon, Here is a build with the columns you've asked for. Specifically | column | name| description | type | |--------|-----|-------------|------| | 10 | alignment_start | leftmost reference position...
@OberonDixon very soon!
Hello @Congnguyenn, I apologize for the delay in getting back to you. > Should I normalize the score with the number of CpG sites in a certain TSS and the...
Hello @Congnguyenn, > I want to understand if the number of reads in a region (depth) affects the score value. For example, consider two TSS regions (TSS1 and TSS2). TSS1...
Hello @JhinJhinJhin, I apologize for the slow response, I've been OOO. Your commands for `pileup`, `extract calls`, and `motif bed` look good to me. > I would like to know...
Hello @JhinJhinJhin, > After I get the entropy, then how do I calculate if the hughs from two different samples are significantly different on a transcript? I don't have a...
Hello @Taylorain, Your command looks correct. It will estimate the probability distributions for each of the modified primary bases and their respective chemical modifications. The table ([schema here](https://nanoporetech.github.io/modkit/intro_sample_probs.html)) can be...