Arthur Rand

Hello @banskotan2, @niradsp, > We notice that for most bases with m6A, there also appears to be a peak for Inosine. I apologize, but could you give me a few...

Hello @banskotan2, > Yes, from what I remember. When I ran modkit without any filtering, each high-probability m6A also had high probability Inosine. Because I saw both Inosine and m6A...

Hello @liuyang2006, Could you tell me how you installed rust and cargo as well as the platform you're running on?. From a quick internet search, I found this [SO](https://stackoverflow.com/questions/68582122/gcc-10-3-1-1-fc32-build-failing-with-gcc-fatal-error-fuse-linker-plugin-b) thread,...

Hello @verdurin, You get this failure because that particular test exercises a function with `debug_assert`s. Typical testing conditions use the `dev` profile whereas you're using the `release` profile, which will...

Hello @verdurin, If changing the test profile in EasyBuild ends up being a dead end, I can disable the test in the release profile. I do tend to use dev-profile...

Hello @verdurin, I've pushed a branch here: https://github.com/nanoporetech/modkit/tree/ar/gh383 and checked that it behaves as expected. Try it at your convienence.

Hello @adbeggs, Yes, I can work on adding those things. As for the sample-sheet, are you thinking of something like `modkit dmr multi` but with a text file as input...

@adbeggs Got it. I can get you a development build with the sample sheet to test soon. I agree that a Bayesian (❤) approach would be a nice add (especially...

Hello @Flower9618, The (new-ish) `modkit extract calls` produces the table that used to be `modkit extract --read-calls `. In v0.4 we made this into a stand-alone command. Please find the...

@mattloose `modkit extract full` will produce the same default table as the versions prior to version 0.4, the [documentation](https://nanoporetech.github.io/modkit/intro_extract.html#description-of-output-table-for-extract-full) shows the schema of the two tables. If you were using...