Arkadiy-Garber

Hi Jan, Thanks for your interest, and apologies that this issue has resurfaced for you. I just combed through the script and identified some potential spots/bugs that might be causing...

Hello, Just touching base on this issue - has this problem been resolved given the latest updates? If so, I will close this issue. Thanks! Arkadiy

Hi Gulya, Your reasoning makes total sense. It does seem like something is going wrong with the clustering step, and I suspect that is where the problem lies. If the...

Thanks, Gulya. You are exactly correct. When providing the --orfs flag, FeGenie skips the step where it clusters genes based on where they are encoded on the genome/contig. I need...

Hi, Thanks for your interest in FeGenie! Yes, that is correct. By default, FeGenie will "inflate" the normalized numbers by 1000 (so to that you don't have to stare at...

Hey Joy, Thanks for the note - hope you are well! :) I was not aware that FeGenie renames contigs. As far as I remember that is not the intended...

Hey Joy! So sorry for the delay in getting to this - been a busy month for me, but I'll have some time coming up to get to this issue....

No worries, you just need to leave extra spaces between lines indicated as code. For the error, I found the bug and addressed it. Could you try re-downloading the github...

Hi Aidan, Thanks for your interest in FeGenie! This looks like an interesting error, which I've never encountered before. It looks like a permissions thing, so if you try running...

Thanks DrRumble, could you please share the command that you used for your FeGenie run?