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Feature Request - Find all Sciuridae with Arthropod parasites

Open Jegelewicz opened this issue 10 months ago • 4 comments

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Is your feature request related to a problem? Please describe. A clear and concise description of what the problem is. Ex. I'm always frustrated when [...]

From today's genomic resources working group meeting.

Describe what you're trying to accomplish A clear and concise overview of the goals; why are you asking for this?

@campmlc wants to find all Sciuridae with Arthropod parasites, so we attempted the search. Here is what we did.

https://arctos.database.museum/search.cfm?customoidoper=LIST&id_references=host%20of&related_item_identification=Arthropoda&family=Sciuridae

image

This gets only the hosts with related records identified as Arthropoda, not all Arthropoda.

Describe the solution you'd like How might we accomplish your goals?

Is there a way to do this search that is evading us? If not, I am thinking we need to be able to refine the Related Item Identification such that it can search specific classification terms or specifically identifications.

Describe alternatives you've considered A clear and concise description of any alternative solutions or features you've considered.

Additional context Add any other context or screenshots about the feature request here.

Priority Please assign a priority-label. Unprioritized issues gets sent into a black hole of despair.

Jegelewicz avatar Apr 12 '24 22:04 Jegelewicz

Upping priority as this is needed for a final grant report that has provided Arctos funding. Any ideas how this can work? We used to have this functionality.

campmlc avatar Apr 24 '24 13:04 campmlc

Pretty sure the search is currently impossible, or at least unreliable, until Flat higher taxonomy is repaired. See https://github.com/ArctosDB/arctos/issues/7699

I'm surprised how little attention that issue has received. To me it's a wildfire!

DerekSikes avatar Apr 24 '24 15:04 DerekSikes

This is the specific kind of request we want to make easy in a dedicated relations (parasites, disease etc) portal.... I still havent made issues for this yet but will soon and it is based on external funding sources

mkoo avatar Apr 24 '24 19:04 mkoo

@mkoo our grant report is coming due - can we do a call to discuss this?

campmlc avatar Apr 24 '24 19:04 campmlc

See proposed solution in #7752

campmlc avatar May 07 '24 02:05 campmlc

This easy to do now -- thanks to https://github.com/ArctosDB/arctos/issues/7695, https://github.com/ArctosDB/arctos/issues/7725 (cleaning up CT in #7752 will help with reliable results)

https://arctos.database.museum/search.cfm?related_id_references=parasite%20of&related_item_taxonomy=Arthropoda&taxon_name=Sciuridae

(your log in may filter your results)

mkoo avatar May 07 '24 03:05 mkoo