SCEVAN icon indicating copy to clipboard operation
SCEVAN copied to clipboard

The fibroblast, EC, and myofibroblasts were also identified as tumor. What are the reasons for this result?

Open gloriafight opened this issue 1 year ago • 4 comments

I'm using SCEVAN to analyze a tumor sample. However, when I use the total cells as input. The result is very strange. image image image

The marker is shown in the figure. We can know that C4 is EC, C11 is fibroblast, C0 and C10 is Epithelial cell. I want to distinguish normal cells and malignancy cells in epithelial cells. The code is as follows: `count_mtx = cr@assays$RNA@counts

results <- pipelineCNA(count_mtx,sample = "aaaa", par_cores = 8)`

gloriafight avatar Apr 12 '23 16:04 gloriafight