AntonioBaeza

TypeError: lastal_task() got an unexpected keyword argument 'pbs'

6

Hi Camille. I installed dammit with bioconda, followed instructions, downloaded databases. When running dammit with the command below I am getting the error above (and below). I will continue trying...

looking forward to use/test this assembler, conda?

1

looking forward to use/test this assembler!, any chance you can add it to conda?

Hello. This problem might be different from the one below. I downloaded rebaler using bioconda. It did not work indicating the problem below. I deleted the enviroment in which rebaler...

stuck downloading packages when testing

5

The installation went well. But, no error message. Just stuck when testing it. (base) [ant@hillary ~]$ git clone https://github.com/dib-lab/elvers.git Initialized empty Git repository in /home/ant/elvers/.git/ remote: Enumerating objects: 734, done....

The following command failed with exit code 127 smalt map -n 10 -O -i 800 -y 0.9 /assembly/tmp.process_seeds.qh2fsh25/out.map_index reads_1.fa reads_2.fa | samtools view -bS -T reference_in.fasta - > /assembly/tmp.process_seeds.qh2fsh25/out.unsorted.bam The...

FATAL message when attempting to rerun program

2

Hi Clement. Unfortunately, I did have a run crashing after more than 24 hr. I am trying to restart the run but there is an error message (any recommendation to...

ERROR : Failed to mount squashfs image in (read only): Invalid argument

1

Admittedly, I am new to singularity, this is the error after installation: (base) ant@hillary:~$ pwd /home/ant (base) ant@hillary:~$ (base) ant@hillary:~$ mkdir ~/dnaPipeTE (base) ant@hillary:~$ (base) ant@hillary:~$ cd dnaPipeTE/ (base) ant@hillary:~/dnaPipeTE$...

Looks like a great tool, any chance you can make it available via conda?

1

Looks like a great tool, any chance you can make it available via conda? #2

I foresee frequent use of this tool. Looks nice! Any chance you can make it available via conda?