LJA
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AntonBankevich
07:07:30 167Mb INFO: Finished loading graph 07:07:31 500Mb INFO: Looking for unique edges 07:07:31 500Mb INFO: Marked 342 long edges as unique 07:07:31 500Mb INFO: Marking extra edges as unique...
I also have seen this error a few times, but it seems pretty nondeterministic. For example this run crashed ``` 04:32:08 73.9Gb INFO: Applying changes to the graph 05:15:48 105Gb...
Hi, I was trying to compile v0.2 (release) using intel compiler instead of gcc for our systems. I got following warning. ``` icpc: command line warning #10006: ignoring unknown option...
I was getting errors compiling the current commit using gcc 11.2 because of errors like ``` LJA/src/tools/graphlite/serialize.hpp:13:1: note: 'std::optional' is defined in header ''; did you forget to '#include '?...
Hi, My assembly crashed after read realignment. Would it be possible to modify lja in order to check what has already been written in the output directory and not restart...
When installing LJA I ran into a few minor issues -- this documents these in the manual and hopefully makes the installation process easier. - Increase required CMake version from...
I am trying to run LJA with simulated HiFi reads of Human Chr 7 (mean length of reads=10kbp, coverage is 10x). But I am having child process crashed error. This...
Dear Anton LJA crashed for [this dataset](https://cloud.bioinformatics.unibe.ch/index.php/s/LCZoDsDqpg5JBQk?path=%2Fbc2130--bc2130). It's only a small bacterial genome dataset (151 MB). What is odd is that it works if I set `-o out`, but not...
