=== Stack Trace === Child process crashed

[Oieswarya]

I am trying to run LJA with simulated HiFi reads of Human Chr 7 (mean length of reads=10kbp, coverage is 10x). But I am having child process crashed error. This is my .o file: 00:00:00 2Mb INFO: Hello! You are running La Jolla Assembler (LJA), a tool for genome assembly from PacBio HiFi reads 00:00:00 2Mb INFO: LJA pipeline started 00:00:00 2Mb INFO: Performing initial correction with k = 501 00:00:00 0Mb INFO: Reading reads 00:00:00 0Mb INFO: Extracting minimizers 00:00:11 1.6Gb INFO: Finished read processing 00:00:11 1.6Gb INFO: 874644 hashs collected. Starting sorting. 00:00:11 1.6Gb INFO: Finished sorting. Total distinct minimizers: 117385 00:00:11 1.6Gb INFO: Starting construction of sparse de Bruijn graph 00:00:11 1.6Gb INFO: Vertex map constructed. 00:00:11 1.6Gb INFO: Filling edge sequences. 00:00:26 1.8Gb INFO: Finished sparse de Bruijn graph construction. 00:00:26 1.8Gb INFO: Collecting tips 00:00:26 1.8Gb INFO: Added 2331 artificial minimizers from tips. 00:00:26 1.8Gb INFO: Collected 252400 old edges. 00:00:26 1.8Gb INFO: New minimizers added to sparse graph. 00:00:26 1.8Gb INFO: Refilling graph with old edges. 00:00:29 1.8Gb INFO: Filling graph with new edges. 00:00:29 1.8Gb INFO: Finished fixing sparse de Bruijn graph. 00:00:29 1.8Gb INFO: Starting to extract disjointigs. 00:00:30 1.8Gb INFO: Finished extracting 29983 disjointigs of total size 131109972 00:00:32 0Mb INFO: Loading disjointigs from file "/home/LJA-main/Outputs/HM7/k501/disjointigs.fasta" 00:00:34 490Mb INFO: Filling bloom filter with k+1-mers. 00:00:45 492Mb INFO: Filled 534849159 bits out of 3714816128 00:00:45 492Mb INFO: Finished filling bloom filter. Selecting junctions. 00:00:55 0.5Gb INFO: Collected 69828 junctions. 00:00:56 0.5Gb INFO: Starting DBG construction. 00:00:56 0.5Gb INFO: Vertices created. 00:00:58 0.5Gb INFO: Filled dbg edges. Adding hanging vertices 00:00:58 0.5Gb INFO: Added 8 hanging vertices 00:00:58 0.5Gb INFO: Merging unbranching paths 00:00:59 0.5Gb INFO: Ended merging edges. Resulting size 26839 00:01:00 0.5Gb INFO: Cleaning edge coverages 00:01:00 0.5Gb INFO: Collecting alignments of sequences to the graph No outgoing for middle

-68385489142965885844029488329806185330G 7129 === Stack Trace === Child process crashed

My command to run is this: /home/LJA-main/bin/lja -o /home/LJA-main/Outputs/HM7/ --reads /home/obhowmik/HM7.fa -t 32

And I am running this is 200 GB.

I ahve also emailed the dbg.log file to the given email address.