Jant007

I'm curious to know if MEGAHIT assembler will work for 454-sequencing-based metagenomic libraries?

Interesting tool; I just would like to have a clarification as to whether shovill removes phiX? I think NOT; correct?

Feature request- normalize samples to the same number of reads in otu table

1

Hi, Can I request for an option (like `otutab_rare` on `usearch`) to normalize samples to the same number of reads in otu table? Many thanks in advance!

Hi, I'm an active user of your cool metaerg tool. I was wondering if I can use metaerg for the annotation of metatranscriptome assemblies (for e.g., an assembly fasta file...

I consistently get the below error message when I run dDocent 2.8.13 (conda installation) on the SLURM-based computation cluster (CentOS Linux release 7.9.2009) at my end. The correct final output...

Error in tabulate(taxon) : 'bin' must be numeric or a factor

3

Hi, I have got the below error when attempting to use gbtools to generate a GC-coverage plot. Any help here would be appreciated ``` library(gbtools) d

Heatmap with pie-chart in background

2

Cool tool and thanks for bringing this out to the community. I was wondering why I'm getting a pie-chart in the background of carbon_cycle_heatmap.pdf but not in any of the...

Hi, I'm a massive fan of your cool MIDAS tool. Is there any way that you could provide an additional script to make the MIDAS profiling output compatible with visualization...

Issue with recursive download

15

I tried ncbi-acc-download --recursive GHGH00000000.1 and I got the below error message. Any help here would be very much appreciated. Traceback (most recent call last): File "/home/user/tools/Python-3.6.2/virtualenv3/bin/ncbi-acc-download", line 10, in...

Probe seq empty?

5

Hi, I've been able to get this nice tool running for my project but one thing I have consistently noticed is that the final *primer.csv file has `Probe` columns always...