Andrew Carroll

Hi @prasundutta87 Both DeepVariant and DeepTrio can produce gVCFs, so you can joint call in a similar manner. In both cases you should use the DeepVariant_unfiltered preset for GLnexus, because...

Hi @prasundutta87 Yes, they are different models. You would presumably want to use either one or the other (all DeepVariant or all DeepTrio). You can merge either with glnexus though.

Hi @westonelison , Thank you for the question. We have experimented with single cell models, but not with ATAC seq specifically. I think the most similar model should be the...

Hi @Axze-rgb It's a reasonable question. We're in the process of training some non-human models using trio data and hopefully this experiment will both be positive and result in release-sable...

Hi @Axze-rgb To date, I've been hesitant to include simulated data as I'm very confident that we don't know all of the diverse and complex ways that errors happen to...