GslCore
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Amyris
Core library and basic plug-ins for the Amyris Genotype Specification Language (GSL) compiler.
Dear All, I would like to try this cool tool. However, I am nearly a fool in programming. Do you have a fool-proof step-by-step manual? Best regards, Bingyin Peng QUT
Hey @daz10000, I'm starting the work of releasing our integration tests and from what I see currently they would need to live in Gslc repo (https://github.com/Amyris/Gslc). I know each of...
This is a request to implement syntax that enables a user to concatenate two strings in GSL. The proposed functionality would work as follows: let a = “foo” let b...
The reference gene format used by the GSL compiler is considered a legacy format.. It was originally derived from an SGD export and even that was obscure. We further complicated...
Currently seamless designs have somewhat adhoc methods for controlling primer design. The amplification tm is controlled by the core targettm pragma but the tail length is a side effect of...
It would be beneficial to have GSL itself be versioned separately from the compiler version.
# Flanking DNA GSL typically models just the designed DNA (e.g. locus, promoter gene terminator constructs), but during the process of construction it is very common to package the design...
# Intro GSL designs are inherently linear in specification. Many of the actual pieces of DNA that scientists are constructing are circular and contain additional implicit DNA sequences in the...
This (admittedly buggy) GSL causes a stack overflow on our production compiler. Please verify of course but pretty sure it's a bug in GslCore ``` let x = oGAL1 let...
Hopefully this one is a little simpler than last PR. This adds the `#tag namespace:tag` feature and extends pragma semantics to add a transient cumulative option.