UCB AMPLab

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Bump htsjdk dependency version to 2.20.3

Test FAILed. Refer to this link for build results (access rights to CI server needed): https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/3045/Build result: FAILURE[...truncated 3 lines...]Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prbWiping out workspace...

Bump htsjdk dependency version to 2.20.3

Test FAILed. Refer to this link for build results (access rights to CI server needed): https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/3056/Build result: FAILURE[...truncated 3 lines...]Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prbWiping out workspace...

Added an optimisation to spare not required shuffle of unpaired reads

Test FAILed. Refer to this link for build results (access rights to CI server needed): https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/3131/Build result: FAILURE[...truncated 5 lines...]Cloning the remote Git repositoryCloning repository https://github.com/bigdatagenomics/adam.git > git init /home/jenkins/workspace/ADAM-prb...

Added an optimisation to spare not required shuffle of unpaired reads

Test FAILed. Refer to this link for build results (access rights to CI server needed): https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/3132/Build result: FAILURE[...truncated 5 lines...]Cloning the remote Git repositoryCloning repository https://github.com/bigdatagenomics/adam.git > git init /home/jenkins/workspace/ADAM-prb...

Added an optimisation to spare not required shuffle of unpaired reads

Test FAILed. Refer to this link for build results (access rights to CI server needed): https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/3133/Build result: FAILURE[...truncated 5 lines...]Cloning the remote Git repositoryCloning repository https://github.com/bigdatagenomics/adam.git > git init /home/jenkins/workspace/ADAM-prb...

Added an optimisation to spare not required shuffle of unpaired reads

Test FAILed. Refer to this link for build results (access rights to CI server needed): https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/3134/Build result: FAILURE[...truncated 5 lines...]Cloning the remote Git repositoryCloning repository https://github.com/bigdatagenomics/adam.git > git init /home/jenkins/workspace/ADAM-prb...

Added an optimisation to spare not required shuffle of unpaired reads

Test FAILed. Refer to this link for build results (access rights to CI server needed): https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/3135/Build result: FAILURE[...truncated 5 lines...]Cloning the remote Git repositoryCloning repository https://github.com/bigdatagenomics/adam.git > git init /home/jenkins/workspace/ADAM-prb...

Added an optimisation to spare not required shuffle of unpaired reads

Refer to this link for build results (access rights to CI server needed): https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/3136/Build result: FAILURE[...truncated 717 B...][WARNING] Reference path does not exist: /home/jenkins/gitcaches/adam.referenceFetching upstream changes from https://github.com/bigdatagenomics/adam.git > git...

Added an optimisation to spare not required shuffle of unpaired reads

Refer to this link for build results (access rights to CI server needed): https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/3137/Build result: FAILURE[...truncated 717 B...][WARNING] Reference path does not exist: /home/jenkins/gitcaches/adam.referenceFetching upstream changes from https://github.com/bigdatagenomics/adam.git > git...

Added an optimisation to spare not required shuffle of unpaired reads

Refer to this link for build results (access rights to CI server needed): https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/3138/Build result: FAILURE[...truncated 713 B...][WARNING] Reference path does not exist: /home/jenkins/gitcaches/adam.referenceFetching upstream changes from https://github.com/bigdatagenomics/adam.git > git...