Adrian Fritz

Hey, thanks for bringing this to my attention. Are you by any chance using python>=3.11? Python 3.11 removed the automatic conversion of sets to lists as population of random samples...

Glad that it works, we tested CAMISIM mainly on Python 3.7. I hope that most of these environment and version problems will be solved once we move to CAMISIM2.0 (coming...

The mapping with scientific names currently only works with the online version of NCBI, the additional reference file is not used for the scientific name mapping. If you already _know_...

These warnings should not stop CAMISIM from running, they just show you that the NCBI mapping failed and CAMISIM uses the additional references to fill up your data set -...

This error is most likely to occur when there is a previous/unfinished CAMISIM run in your `out` directory. Could you make sure that the `out` directory is empty and try...

Since this error occurs during anonymising, could you try running CAMISIM without anonymising and see if you still encounter errors?

Hi, without knowing what exactly you changed this is _very_ hard to tell, is the above screenshot the only position in the code you changed? Unfortunately, the PBsim version for...

Adding PBSim2 to CAMISIM is on my todo list (#131), but it has not been completed yet. Your error most likely occurs because of some changes in PBSim2 in comparison...

Hi, sorry for not answering earlier. The error profiles for both `ART` and `Nanosim` need to be pre-trained on real sequencing runs. We have trained custom error profiles for both...