Adrian Fritz

No, these do not need a header, just genome_ID and abundance tab-separated

Most of these are just warnings, some of which even come directly from ete3/NCBITaxa, CAMISIM should still simulate a data set. The `Rank class ...` warning means that up to...

Hey, yeah this error keeps popping up and unfortunately it is hard for me to reproduce/change something on the CAMISIM end. In this case it _might_ be due to the...

That is unfortunate. If you are able to get _some_ version of samtools to run, you could try to link that version to CAMISIM using the `samtools` option. CAMISIM has...

Hi, yes, unfortunately the Dockerfile is not up to date. If you get it to run I would be very happy to review a pull request, but I currently do...

Hi, thank you for your interest in CAMISIM. CAMISIM inherently does not care about the genomes' relatedness and since you assign the NCBI ID of `2` to all of them,...

Hi, it seems like you actually have the genome with the ID `MGYG-HGUT-00512` in your metadata/genome_to_id twice (8 and 138). The genome ID has to be unique, so you will...

Hi, the tutorial for the current version of CAMISIM can be found when clicking on [`CAMISIM 1.3`](https://github.com/CAMI-challenge/CAMISIM/wiki/CAMISIM-1.3). There is a new nextflow-based version of CAMISIM in the making and we...

The nextflow version is not extensively tested and there is no yaml file available at this moment

This is an environment with which CAMISIM works on our servers (`txt` since you cannot upload `yml` files to issues): [camisim.txt](https://github.com/CAMI-challenge/CAMISIM/files/13937768/camisim.txt). I cannot guarantee this is the _minimal_ set of...